Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2252 ATGCCATCCCTCAATATCCATCCTCCGTTGCCATCGCTTCAAAACCCTAACTTGGACCAAATCCAGCTCTTCAAACCCATTAAAGTCTTCAATCTCCTCCTAAGTTCCAGAACTCCTCTATCTGCTGACTTCCGCCGCTACAAGAGGACCTACAGTTTTTACTTGAGGATTCAAAACCGTAGCATCCACCCCCGGAGGATTAATTGCAATTTTAAGGATTCCGGAGAAGACACTAAGGCGGTCTTAGACTCGGGTGGCGGTGATGATGGGGGAGAGGGTGGTGGTAATGGCGGCGAGGGTGGCGATGATGGGCTGGTGGAGAAAAAAGATGGGTCTTCGGGGCCTTTGCTAGATTGGTTGAATTTTACTTCCGATGACGCAAAGACAGTTTTTGCGGCGCTGGCAATCTCGCTTGCGTTTCGGTCGTTCGTGGCCGAGCCGAGGTACATTCCTTCGTTGTCAATGTATCCTACATTTGATGTCGGAGATCGAATTGTAGCAGAAAAGGTTACATACTATTTTAGAAAGCCATGCGCAAATGACATAGTGATATTTAAAAGCCCACCAGTCCTTCAAGAAGTTGGATATACCGATGATGATGTTTTCATAAAACGAGTGGTTGCAAAGGAAGGTGATATTGTGGAGGTTCGTAAAGGGCACCTTATAGTTAATGGGGTTGAAAGGAATGAAAAATTTGTCCTTGAGCCACCTTCTTATGACATGAAACCTACACGTGTACCAGAGAACTATGTCTTTGTGATGGGAGACAACCGCAATAACAGCTATGATTCGCATGTGTGGGGTCCCCTGCCAGCCAAGAATATCATAGGGAGATCAGTATTTCGCTATTGGCCACCAAATAGGATTGGCAGCACAGTTTCTAGGGAGCTTTGTCCTGTTGAAAGCGAGCAGGGTACTAGTCTAGCATCTCAATGA 936 0.4637 MPSLNIHPPLPSLQNPNLDQIQLFKPIKVFNLLLSSRTPLSADFRRYKRTYSFYLRIQNRSIHPRRINCNFKDSGEDTKAVLDSGGGDDGGEGGGNGGEGGDDGLVEKKDGSSGPLLDWLNFTSDDAKTVFAALAISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDIVEVRKGHLIVNGVERNEKFVLEPPSYDMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIGSTVSRELCPVESEQGTSLASQ 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2252 311 MobiDBLite consensus disorder prediction 78 107 - -
Glsi01g2252 311 PANTHER SIGNAL PEPTIDASE I 117 290 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi01g2252 311 ProSitePatterns Signal peptidases I serine active site. 152 159 IPR019756 GO:0004252|GO:0016020
Glsi01g2252 311 PRINTS Bacterial leader peptidase 1 (S26A) family signature 143 159 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi01g2252 311 PRINTS Bacterial leader peptidase 1 (S26A) family signature 246 265 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi01g2252 311 PRINTS Bacterial leader peptidase 1 (S26A) family signature 202 214 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi01g2252 311 Pfam Signal peptidase, peptidase S26 127 284 IPR019533 GO:0004252|GO:0006465
Glsi01g2252 311 CDD S26_SPase_I 146 278 IPR019533 GO:0004252|GO:0006465
Glsi01g2252 311 Gene3D Umud Fragment, subunit A 140 297 - -
Glsi01g2252 311 SUPERFAMILY LexA/Signal peptidase 141 292 IPR036286 -
Glsi01g2252 311 ProSitePatterns Signal peptidases I signature 3. 251 264 IPR019758 GO:0004252|GO:0016020
Glsi01g2252 311 NCBIfam signal peptidase I 128 286 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi01g2252 311 FunFam Peptidase/ serine-type peptidase 152 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2252 Glsi-ChrGlsi01 85412649 85416035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2252 155 285 MADS-box Gene Family AT1G29960 32.331 1.55e-11 58.9