Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2251 ATGTCGACGACGCCGTCTCCCGGAGCTGCTCCGGCACCCACGTCGCCGCCGGCGACCAACACCACTTCTCCTCCTCCCCCGACCCCTTCTGCTCCGCCACCAGCCACTCCCTCTGCACCACCCCCAGCCACTCCCTCTGCACCACCACCGGCTATTCCTTCAGCGCCTCCACCGGCTACGCCTTCAGTGCCTCCGCCGGCCACTCCTTCCCCTCCAGCCCCAACCACGCCAGCTCCCAGTCCTCCTTCTCTCTCACCTCCTTCACCGTCTAAGCCATCATCTTCCCCGCCATCCCAATCTTCGGCCTCGCCTCCTCCTCCTTCTAGTACCAACACTCCATCGAGTCCGGCGACTCGGAGCTCGCCGCCTCCTCCGTCTAGCTCGGGCTCGCCCTCAACTCCGAACCGAAGCCCGTCGCCACCTTCGTCAAAATCGCCGGCGTCTTCTGGTTCGTCGAGTATATCAACTGGCGTTGTTGTTGGAATCGCCGTTGGGGCTGTGGCGATTCTTCTAGTGTTGAGTATTCTGTGCATATGTTGTAGGAAGAAGAAGAGAAGACGTGATGAGGAATACTATGTGCCACCACCGCCGCCTCAGGCACCTAAAGTTGACCCATATGGTGGCCCACCACGTCAGTGGCAACATAACGCTCCCCCTCCTTCAGATCATGTCGTTTCAGTAATGCCAAAGCCATCACCACCTCCACCAGTTGCATCACGGCCTCCCCAACCACCAGTTTATGTTCCTCAACCTCCACCGCCACCGCCACCTTTCATGAGCAGCAGTGTAGGGTCTGGCTATTCAGGTGGTGAAAGCCCACTTCCGCCTCCTTCTCCAGGCTTTGCATTGGGTTTCTCGAAGAGCACATTTACATACGAGGAGTTAGCACGGGCAACAGATGGCTTTACTGATGCCAACCTCCTTGGACAAGGTGGATTTGGGTATGTCCACAGAGGAATTCTTCCCAATGGGAAGGAGGTGGCTGTCAAGCAGTTAAAGGCTGGAAGTGGGCAGGGCGAGCGTGAATTTCAAGCTGAGGTAGAGATAATTAGCCGGGTTCATCACAAACATCTTGTTTCTTTGGTTGGATACTGCATCACTGGCACCCAGAGGTTGCTTGTTTATGAATTTGTTCCCAACAACACAATGGAGTTCCACTTACATGGAAAAGGGCGACCCACTATGGACTGGCCCACAAGACTGAAAATTGCTTTAGGATCTGCAAAAGGACTGGCGTATCTTCACGAGGATTGTCATCCCAAGATAATCCATCGTGATATCAAAGCTGCTAACATACTTCTGGATTTCAAGTTTGAAGCAAAGGTTGCAGATTTTGGACTTGCAAAGATTGCTTCTGATGTCAATACTCATGTTTCCACTCGAGTAATGGGGACTTTTGGTTATCTAGCTCCAGAATATGCTGCTAGTGGGAAACTTACAGACAAGTCAGATGTTTTCTCCTTTGGAGTCATGCTTCTGGAATTAATTACTGGACGCCGACCTGTGGATTCAAGTCATACTTTCATGGAGGATAGTTTGGTAGACTGGGCAAGGCCTGTGCTCACACGTGCTTTGGAAGAACAAAATTTTGATTCTCTGGTTGATCCAAGAATCCAAAATGAATATGACTCCAATGAGATGGCTCGCATGGTGGCATGTGCTGCAGCTTGCATACGACATTCAGCTCGGCGTAGACCAAGGATGAGCCAGGTTGTTCGTGCTCTGGAAGGAGATGTGTCTCTAGCAGATCTTAACGAGGGAATTAGACCTGGACACAGCACTATGTACAGTTCTCATGGAAGCTCAGATTATGACACTGCACAATACAAGGAGGACATGAAAAAGTTCAAAAAAATGGCATTAGGAGGAGGAACCCAGGACTATGGCGCCAGCAGTGAATACAGCGGACCACCTACAAGCGAGTACGGTCTATACCCATCTGGCTCAAGCAGTGAAGGCCAGAGCCGCCAGACCACAAGGGAAATGGAAATGAGAAAGATGAAAAACAACCAAGGTTTCAGTGGAAGTTCTTGA 2034 0.5167 MSTTPSPGAAPAPTSPPATNTTSPPPPTPSAPPPATPSAPPPATPSAPPPAIPSAPPPATPSVPPPATPSPPAPTTPAPSPPSLSPPSPSKPSSSPPSQSSASPPPPSSTNTPSSPATRSSPPPPSSSGSPSTPNRSPSPPSSKSPASSGSSSISTGVVVGIAVGAVAILLVLSILCICCRKKKRRRDEEYYVPPPPPQAPKVDPYGGPPRQWQHNAPPPSDHVVSVMPKPSPPPPVASRPPQPPVYVPQPPPPPPPFMSSSVGSGYSGGESPLPPPSPGFALGFSKSTFTYEELARATDGFTDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGTQRLLVYEFVPNNTMEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKIASDVNTHVSTRVMGTFGYLAPEYAASGKLTDKSDVFSFGVMLLELITGRRPVDSSHTFMEDSLVDWARPVLTRALEEQNFDSLVDPRIQNEYDSNEMARMVACAAACIRHSARRRPRMSQVVRALEGDVSLADLNEGIRPGHSTMYSSHGSSDYDTAQYKEDMKKFKKMALGGGTQDYGASSEYSGPPTSEYGLYPSGSSSEGQSRQTTREMEMRKMKNNQGFSGSS 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2251 677 ProSiteProfiles Protein kinase domain profile. 302 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2251 677 SMART serkin_6 302 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2251 677 MobiDBLite consensus disorder prediction 626 677 - -
Glsi01g2251 677 Gene3D Transferase(Phosphotransferase) domain 1 378 585 - -
Glsi01g2251 677 Pfam Protein tyrosine and serine/threonine kinase 306 575 IPR001245 GO:0004672|GO:0006468
Glsi01g2251 677 SUPERFAMILY Protein kinase-like (PK-like) 277 575 IPR011009 -
Glsi01g2251 677 MobiDBLite consensus disorder prediction 1 154 - -
Glsi01g2251 677 PRINTS Proline rich extensin signature 17 33 - -
Glsi01g2251 677 PRINTS Proline rich extensin signature 38 50 - -
Glsi01g2251 677 PRINTS Proline rich extensin signature 53 74 - -
Glsi01g2251 677 PRINTS Proline rich extensin signature 3 15 - -
Glsi01g2251 677 MobiDBLite consensus disorder prediction 224 260 - -
Glsi01g2251 677 FunFam proline-rich receptor-like protein kinase PERK1 280 377 - -
Glsi01g2251 677 MobiDBLite consensus disorder prediction 9 141 - -
Glsi01g2251 677 MobiDBLite consensus disorder prediction 187 280 - -
Glsi01g2251 677 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 165 641 IPR047117 -
Glsi01g2251 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Glsi01g2251 677 FunFam Proline-rich receptor-like protein kinase PERK1 378 586 - -
Glsi01g2251 677 MobiDBLite consensus disorder prediction 628 657 - -
Glsi01g2251 677 Gene3D Phosphorylase Kinase; domain 1 284 377 - -
Glsi01g2251 677 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2251 Glsi-ChrGlsi01 85406180 85409679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2251 122 660 Trihelix Transcription Factor Family AT1G70460 49.267 6.63e-169 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Glsi01g2251 PK_Tyr_Ser-Thr 7.1e-47 CL0016