Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2240 ATGAAAGCCACGTTAGCGACCCCTTGGTTACTTGTGGATGCGTTCCATCGTATATTATGGTGCTCCAACATCTTGCAAAAAGCTAATGCCCCTCGCAGAACACAGACTCCAATTCATAATACACCCGGCGTCTCTGACAAACAAAACTATCTCTCTCTCTCGCACTTTCTTCGTCGCTTCAGCTTCTCCTCCATTAATGGGATGGAGCAGAACGACGTCATCGCACCGTTCGTTATAAAGACCTTTCAGATGGTCAATGATCCCACCTCTGACGCTCTTATCACTTGGGGCCGTGCCAACAATAGCTTCATCGTCTTTGACCCTTTGGAGTTCTCCCAGAGGATCCTACCGGTGTATTTCAAGCACAACAACTTCTCAAGCTTCGTTCGTCAGCTAAATACCTATGGGTTCAGAAAGGTGGATCCAGATCGATGGGAGTTTGCGAACGAGTGGTTCCTTCGCGGGCAGAATCATTTGTTGAAGAATATTGTGAGAAGGAAGCACAGCAGGAACTATTTTCAGGGGAAGCATGAAGAATTGGACGACGAATCGTTGGTGATGGAGATAAGCAGGTTGAAGGAAGAGCAGAAGGCGTTAGAGGAAGAACTTCAAGGGATGAATAAGAGATTGGAAGCCACAGAAAGACGACCCCAGCAAATGATGGCTTTTCTGTGCAAATTTGTGGAGGACCCAGATGTCCTATCTCGTATGTTGCTGGAGAGAGAACGGAAACAGCTGGGGGAGAAGAAGAGGCGGCTGATACCGGCGGCGCCAACCTCGTCGTCGCCTTCGTCAGTTATGGCGGTGACCAATTCGGTGAAGACGGAGTTTGAGGAAGATGAAGCAACTGTGGGTGCTATAATATCTTCGTCCCCAGAGACTGGTTTTGAGATTGATAATTTTTGTCAGGCATCGCCTACGGAGGAAATAGTCGCCGGCAACAATACGCTGTCGGACTGGTGGAATCAAAGGCATGGAATAATGGGGAGGTCTAGGATTACTCAACAGGCTTATAATCGGAGCGCTGTTTCAAGCCCGTTAACGGCGGTTGTGGCTGGGAGAATAGACAACAACAATTCGGGATGCGAAAATAGTAGAGGGGAAATGAGCTATTTTACAGAAATGGCGGCGGAGAGCAGTCCACGGCTGCCTTATCCATTTTCGCTGCTGGAAGGTGGTTTCTAA 1185 0.4844 MKATLATPWLLVDAFHRILWCSNILQKANAPRRTQTPIHNTPGVSDKQNYLSLSHFLRRFSFSSINGMEQNDVIAPFVIKTFQMVNDPTSDALITWGRANNSFIVFDPLEFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQNHLLKNIVRRKHSRNYFQGKHEELDDESLVMEISRLKEEQKALEEELQGMNKRLEATERRPQQMMAFLCKFVEDPDVLSRMLLERERKQLGEKKRRLIPAAPTSSSPSSVMAVTNSVKTEFEEDEATVGAIISSSPETGFEIDNFCQASPTEEIVAGNNTLSDWWNQRHGIMGRSRITQQAYNRSAVSSPLTAVVAGRIDNNNSGCENSRGEMSYFTEMAAESSPRLPYPFSLLEGGF 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2240 394 PRINTS Heat shock factor (HSF) domain signature 77 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi01g2240 394 PRINTS Heat shock factor (HSF) domain signature 128 140 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi01g2240 394 PRINTS Heat shock factor (HSF) domain signature 115 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi01g2240 394 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 72 272 IPR027725 -
Glsi01g2240 394 SMART hsfneu3 73 166 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi01g2240 394 FunFam Heat stress transcription factor B-4 69 167 - -
Glsi01g2240 394 Pfam HSF-type DNA-binding 77 166 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi01g2240 394 Gene3D - 68 167 IPR036388 -
Glsi01g2240 394 ProSitePatterns HSF-type DNA-binding domain signature. 116 140 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi01g2240 394 SUPERFAMILY "Winged helix" DNA-binding domain 74 166 IPR036390 -
Glsi01g2240 394 Coils Coil 182 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2240 Glsi-ChrGlsi01 85355933 85357224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2240 73 261 HSF AT3G24520 67.358 1.47e-89 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi01g2240 HSF_DNA-bind 6.4e-30 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g2240 01 85355933 85357224 Glsi01g2240 01 85355933 85357224 ECH