Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2230 ATGGCTGGCGTCCCCAATGGCCAACCAGCTGAGATCCCCACCATTAAGTTCACCAAGCTCTTCATCAATGGTCAATTTGTTGATTCCATTTCAGGAAAAACGTTTGAGACAAGAGATCCAAGAACAGGAGAAGTGATTGCAAAGATCGCAGATGCTACCAAAGAAGATGTGGATATTGCTGTGAAAGCGGCACGCCAAGCTTTTGATTTCGGTCCATGGCCACGTTTGTCCGGCGCAGCGAGAGCAAAAATTATGATGAAATGGGCAGAGCTAATTGATGAACACGTAGCAGAATTAGCAGCATTAGAAGCCATTGATGCAGGTAAGCTATACCTTGTGTGCAAAGCTATGGAAATTCCTCTACTAACCAGTACCGTACGTTACTATGCTGGTGCTGCTGATAAGATTCATGGAGATGTATTAAAAATGGACGGGGAGTTTCAAGCATATACACTTCTTGAACCAATTGGTGTAGTGGGACACATTATTCCTTGGAATTTTCCTAGTTTCATGTTTCTGAGTAAGGTTAGCCCTGCCTTAGCTGCTGGTTGCACCATGCTCCTCAAGCCTGCTGAGCAAACTCCTCTCTCTGCTTTGTTTCTTGCTTATCTTGCCAAGCTTGCTGGAATCCCAGATGGAGTGCTCAATGTAGTACCTGGTTTCGGTCACATTGCTGGTGCTGCAATAACCTCACATATGGACATTGATGCGGTCAGCTTTACGGGTTCAACAGAAGTAGGGCGTAAAGTAATGGAGGCTGCAGCTAGAAGTAATTTGAAATCAGTTTCACTGGAACTGGGAGGAAAGTCACCACTCATCATTTTTGATGATGCTGACGTAGACAAAGCCGTAGAGATTGCACTTTCGGGTTTCCTATTTAATAAGGGAGAAGTTTGTGTTGCAAGTTCCAGAGTGTTCGTTCAGGAAGGGATTTATGATGAATTTGAGAAGAAATTGGTGCAGAATGCAAAAGCTTGGGTAGTCGGGGACCCTTTTGATCCTAAAGTTCAGCAAGGACCTCAGGTTGACAAGAAGCAGTTCGATAAAATTCTTTCGTATATTGAGCATGGAAAAAGAGAAGGAGCCACTCTGTTGGCTGGTGGTAAACCAGTAGGCGACAAGGGATACTACATTGAGCCAACTGTTTTCGTCAATGTTAAGGAGGACATGCGCATAGCACAAGAAGAAATATTTGGGCCTGTGGTGACACTCTTCAAGTTCAAGAGCATTGAGGAAGCAATTAAGAGTGCAAACAATACAAAGTATGGGTTAGCAGCTGGGATAGTGACAAAGAACTTGGATATAGCAAACACTGTGTCAAGATCGATTCGAGCAGGTTTTGTTTGGATCAACTGCTATCTTAAGATAGAGAGCGACACTCCTTTTGGAGGGTATAAGATGAGTGGATTTGGAAAGGATTTCGGAAAGGAAGCCCTTCACAAGTACCTCCACGTTAAATCTGTCGTTACTCCTATTTACAATTCTCCTTGGCTTTGA 1497 0.4375 MAGVPNGQPAEIPTIKFTKLFINGQFVDSISGKTFETRDPRTGEVIAKIADATKEDVDIAVKAARQAFDFGPWPRLSGAARAKIMMKWAELIDEHVAELAALEAIDAGKLYLVCKAMEIPLLTSTVRYYAGAADKIHGDVLKMDGEFQAYTLLEPIGVVGHIIPWNFPSFMFLSKVSPALAAGCTMLLKPAEQTPLSALFLAYLAKLAGIPDGVLNVVPGFGHIAGAAITSHMDIDAVSFTGSTEVGRKVMEAAARSNLKSVSLELGGKSPLIIFDDADVDKAVEIALSGFLFNKGEVCVASSRVFVQEGIYDEFEKKLVQNAKAWVVGDPFDPKVQQGPQVDKKQFDKILSYIEHGKREGATLLAGGKPVGDKGYYIEPTVFVNVKEDMRIAQEEIFGPVVTLFKFKSIEEAIKSANNTKYGLAAGIVTKNLDIANTVSRSIRAGFVWINCYLKIESDTPFGGYKMSGFGKDFGKEALHKYLHVKSVVTPIYNSPWL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2230 498 FunFam Aldehyde dehydrogenase, putative 460 486 - -
Glsi01g2230 498 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 268 457 IPR016163 GO:0016620
Glsi01g2230 498 SUPERFAMILY ALDH-like 13 494 IPR016161 GO:0016491
Glsi01g2230 498 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 486 IPR016162 GO:0016491
Glsi01g2230 498 CDD ALDH_F1-2_Ald2-like 18 489 - -
Glsi01g2230 498 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 292 303 IPR016160 GO:0016491
Glsi01g2230 498 FunFam Aldehyde dehydrogenase3 268 457 - -
Glsi01g2230 498 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 9 488 - -
Glsi01g2230 498 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 22 295 - -
Glsi01g2230 498 Pfam Aldehyde dehydrogenase family 27 488 IPR015590 GO:0016491
Glsi01g2230 498 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 264 271 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2230 Glsi-ChrGlsi01 85305563 85309210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2230 11 498 Aldehyde Dehydrogenase Gene Family AT3G24503 67.280 0.0 700