Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2224 ATGTGGTGTATTCTACGTTCTCGAGAGAGAGAGAGAGAGAGAGAGATGGCTGGAGTCTTAAATGGCAAACCAGAAATCCCCACTATCAAGTTCACCAAGCTTTTCATCAACGGACAGTTTGTTGACTCCCTTTCAGGGAAGACGTTTGAGACCGTAGATCCGAGAACAGAAAAAGTGATTGCTAGGATTGCAGAGGGAACTAAAGAAGACGTTGATCTTGCTGTAAAGGCCGCACGCGACGCCTTTGACTTCGGTCCATGGCCACGCCTGCCCGGCGTCGAAAGAGCAAAAATTATGATGAAATGGGCAGATTTAATTGATGAGAACAAAGAAGAACTATCAGCATTAGACGCAATTGATTGTGGTAACTTATACCATTGGTGCAAGGATAACGAAATTCCCCTAATAGTAAATATCATACGTTACTATGCTGGTGCTGCTGACAAAATTCATGGAGATGTATTAAAAATGGATGGAGAGTTCCAAGCATATACGCTTCGTGAACCAATTGGTGTTGTGGGACTAATTATTCCCTGGAATTTTCCTGGCTTCATGTTCATCAACAAGGTTAGCCCTGCCTTAGCTGCTGGTTGCACCATGGTCCTCAAGCCTGCTGAGCAAACGCCTCTCTCTGCTTTGCTTTATGTCCATCTTGCCAAGCTGGCTGGAATTCCAGATGGAGTGCTAAATGTTGTACCTGGATATGGGTCAATAGCTGGTGCTGCAATAAGCTCGCACATGGACATTGACGCGGTTAGCTTCACGGGTTCAACAGAAGTAGGACGTCAAATCGCACGAGCTGCAGCTATGAGTAATATGAAACCAGTTTCACTTGAATTAGGAGGCAAGTCACCCCTCATAATTTTTGATGATGCCAATGTAGATAAAGCTGTTGAGCTTGCGCTCGAGAGCATCCTATTTAACAAGGGAGAAGTCTGCATTGCTAGTTCCCGTGTTTACGTCCAGGAAGGGATTTATCATGAATTTGAGAAAAAATTGGTGGAGAAAGCAAAAGTTTGGGTAGTTGGAGACCCTTTTGATCCTAAAGTTCAGCAAGGACCCCAGGCTGACAAGAAGCAATTTGAAAAAATTCTTTCATATATTGAGCATGGAAAGAGAGAAGGAGCCACTCTGTTGACCGGGGGTAAGGCAATGGGCAAAAAGGGATACTATATTGAGCCTACTATTTTCGCCAATGTCAAGGAGGACATGGTTATAGCACAAGATGAAATATTCGGTCCGGTGTTGTCACTGATGAAGTTCAAGAGCATTGAGGAAGCAATTAAGAGGGCTAACGATACCAGATATGGCTTAGCAGCAGGGATTGTGACCAAGAACATAGATATAGCAAACACTATGTCCAGGTCGATCCGTGCAGGCACTATTTGGATTAACTGCTACAATGCATTTAGCCCTGATTGTCCTTATGGAGGGTACAAGATGAGCGGATTTGGAAGAGAGTTTGGAATGGAAGCCCTTCACAAATACCTGCAAATTAAATCTGTTGTATCCCCCATTTATAATTCTCCTTGGCTTTGA 1539 0.4386 MWCILRSREREREREMAGVLNGKPEIPTIKFTKLFINGQFVDSLSGKTFETVDPRTEKVIARIAEGTKEDVDLAVKAARDAFDFGPWPRLPGVERAKIMMKWADLIDENKEELSALDAIDCGNLYHWCKDNEIPLIVNIIRYYAGAADKIHGDVLKMDGEFQAYTLREPIGVVGLIIPWNFPGFMFINKVSPALAAGCTMVLKPAEQTPLSALLYVHLAKLAGIPDGVLNVVPGYGSIAGAAISSHMDIDAVSFTGSTEVGRQIARAAAMSNMKPVSLELGGKSPLIIFDDANVDKAVELALESILFNKGEVCIASSRVYVQEGIYHEFEKKLVEKAKVWVVGDPFDPKVQQGPQADKKQFEKILSYIEHGKREGATLLTGGKAMGKKGYYIEPTIFANVKEDMVIAQDEIFGPVLSLMKFKSIEEAIKRANDTRYGLAAGIVTKNIDIANTMSRSIRAGTIWINCYNAFSPDCPYGGYKMSGFGREFGMEALHKYLQIKSVVSPIYNSPWL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2224 512 FunFam Aldehyde dehydrogenase, putative 474 500 - -
Glsi01g2224 512 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 36 500 IPR016162 GO:0016491
Glsi01g2224 512 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 306 317 IPR016160 GO:0016491
Glsi01g2224 512 SUPERFAMILY ALDH-like 27 508 IPR016161 GO:0016491
Glsi01g2224 512 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 278 285 IPR029510 GO:0016491
Glsi01g2224 512 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 23 502 - -
Glsi01g2224 512 Pfam Aldehyde dehydrogenase family 41 502 IPR015590 GO:0016491
Glsi01g2224 512 FunFam Aldehyde dehydrogenase3 282 471 - -
Glsi01g2224 512 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 282 471 IPR016163 GO:0016620
Glsi01g2224 512 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 36 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2224 Glsi-ChrGlsi01 85242603 85245747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2224 25 512 Aldehyde Dehydrogenase Gene Family AT3G24503 69.734 0.0 711