Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2223 ATGCCAAGCCGATCAACCGGAACCATAACCCAAGACTGGGAACCGGTGGTTCTCCACAAGTCTAAACCCAAGGCACAGGACTTGCGCAACCCGAAAGTCGTGAACCAGGCACTCCGGTCCGGAGCAGAGGTCCAGGCGATCAGGAAGTTCGACGCCGGGTCTAACAAGAAAAGCGCGCCGGTGGTTAACGCCAAAAAGCTGGACGAAGGAACGGAACCGGCGGCTCTGGAGCGGATAGCGACGGAGGTGAGGCATGCCATACAGAAAGCTAGATTGGAGAAGAAGATGAGCCAAGCGGAGCTGGCGAAGCAGATTAACGAGCGGCCACAGTTAGTGCAGGAGTACGAGAATGGGAAAGCGGTGCCGAACCAGGCCGTGCTGGCGAAGATGGAAAGAGTGCTGGGCGTGAAGCTCAGGGGAAAGATTGGCGGGAAGTGA 438 0.5753 MPSRSTGTITQDWEPVVLHKSKPKAQDLRNPKVVNQALRSGAEVQAIRKFDAGSNKKSAPVVNAKKLDEGTEPAALERIATEVRHAIQKARLEKKMSQAELAKQINERPQLVQEYENGKAVPNQAVLAKMERVLGVKLRGKIGGK 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2223 145 Coils Coil 87 107 - -
Glsi01g2223 145 Pfam Multiprotein bridging factor 1 11 79 IPR013729 -
Glsi01g2223 145 SUPERFAMILY lambda repressor-like DNA-binding domains 82 138 IPR010982 GO:0003677
Glsi01g2223 145 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 11 141 - -
Glsi01g2223 145 CDD HTH_XRE 86 138 IPR001387 -
Glsi01g2223 145 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Glsi01g2223 145 FunFam Multiprotein bridging factor 1 71 144 - -
Glsi01g2223 145 SMART mbf_short4 86 141 IPR001387 -
Glsi01g2223 145 Gene3D - 70 145 IPR010982 GO:0003677
Glsi01g2223 145 Pfam Helix-turn-helix 87 138 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2223 Glsi-ChrGlsi01 85241211 85241648 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Glsi01g2223 MBF1 1.4e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g2223 01 85241211 85241648 Glsi01g2223 01 85241211 85241648 ECH