Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2190 ATGGAGATGGTAGACAGCATTGTCAGTCTCTTTCTTCTCCTTATGCTTCTTCTGATCATCGTCCTCATCTTTTTTGCCTGCAAACCATGGCGCTTCATTTTTTGGTCGCGTTCTCGCTTCTCCATTAAGGATGGTGACCTAGAGAGGCCCCTTGTTGTAAATGATGCGAGTGTGTTACGTAATCAGAGCAATGAATTGCCTAGAGACTATGATCTTGAGGGTGCATGCTTTTCAAATGAAGGTCATTTTCGCTCACCACGAACACATGGACTTGTTTATAAGCAAAGGCTTGCTGCTGCTTCTCCTAATGTGCCTCAAGGTGATAGTTTGGTTGTAGATGTAGTTTCTGATCCTGCAGATGTTGCCGTTGGTCAAACACTTAAGCTGCCCCCAGCTCAGTTAGCAGAAATTCAAAAGCATAGTAGAGTGAATCTTGGAAATGATAGACTGCAAGACTTGGTGCAAAGAGATATTTTAGATCAAAGATGTTGCCTCACTCTGGAGGTTATCAGTGGGCCGTCTCGTGGAATTCGTTGTTCTGTACAGTCAACAAATCCCTCTCATCTACCACTGACCCTGGGAAGAGTTTCTCCGAGTGATTTATTAGTAAAGGATTCGGAAGTATCAGGAAAACATGCTCTAATCAATTGGAACTTAGATAAAATGAAATGGGAGTTGGTAGATATGGGTAGCCTGAATGGAACACTTCTAAATTCTCGTCCAATCAACCATCCAGACTCTGAAAGAAGGTGTTGGGGTGATCCAATTGAGCTTGCTAATGGAGATATCATTACTCTTGGAACAACATCAAATGTAATTGTTCATATTACTTCTCAAAATAGGAATCAAATTCCCTTTGGAGTTGGTATGGCATCAGATCCAATGGCCTTGCGTCGAGGAGGAAAGAATCTGCCTATGGAAGATGTTTGCTATTATCAATGGCCTCTACCTGGGCTAGATCAGTTTGGACTATTTGGCATTTGTGATGGGCATGGTGGAGATGGCGCTGCTAAATCTGCTAGCAAACTTTTTCCTGAGATTGTTGCTAGTATATTATCAGATTCATTAAAAAGGGAGAGAGTTTTATCTCTCCGTGATGCATCAGATGTTCTTAGAGATGCATTTTCTCAAGCAGAAGCAAGCATGAATCACCATTACGAGGGATGTACAGCAACAGTGCTACTGGTATGGGCTGATGGTGACAAAAATTTCTTTGCACAATGTGCAAATGTTGGAGACTCCTCCTGTGTTATGAGTGTTGATGGGAAACAAATCAAGATGACAGAAGATCATAAAATAACAAATCATTCTGAAAGACTCCGAATTGAAGAGACTGGTGAACCATTGAGAGATGGGGAAACACGTCTATATGGTATAAATCTTGCAAGGATGCTTGGGGACAAATTTCTCAAACAGCAGGATTCCCGGTTCAGTTCAGAGCCTTATATAAGTCAAGTTGTGCATATTGATCAAGCAAGCAGAGGTTTCGCTGTTCTAGCTAGTGATGGGTTATGGGATGTCATCAGCATGAAGAAGGCAGTTCAGTCAGTGCTTCAGATGAGGGAAAGATACTCCACAGTTACAGAGAATTCAGCAGAAAAGGTTGCTAATTCCCTAGTGAGTGACGCTAGAACACTCAGAACAAAGGATAACACCTCTGTAATTTTTTTAGATTTTGATAACTTCACCAGATTATCATGTAAACCTGAGTCCTAG 1716 0.4161 MEMVDSIVSLFLLLMLLLIIVLIFFACKPWRFIFWSRSRFSIKDGDLERPLVVNDASVLRNQSNELPRDYDLEGACFSNEGHFRSPRTHGLVYKQRLAAASPNVPQGDSLVVDVVSDPADVAVGQTLKLPPAQLAEIQKHSRVNLGNDRLQDLVQRDILDQRCCLTLEVISGPSRGIRCSVQSTNPSHLPLTLGRVSPSDLLVKDSEVSGKHALINWNLDKMKWELVDMGSLNGTLLNSRPINHPDSERRCWGDPIELANGDIITLGTTSNVIVHITSQNRNQIPFGVGMASDPMALRRGGKNLPMEDVCYYQWPLPGLDQFGLFGICDGHGGDGAAKSASKLFPEIVASILSDSLKRERVLSLRDASDVLRDAFSQAEASMNHHYEGCTATVLLVWADGDKNFFAQCANVGDSSCVMSVDGKQIKMTEDHKITNHSERLRIEETGEPLRDGETRLYGINLARMLGDKFLKQQDSRFSSEPYISQVVHIDQASRGFAVLASDGLWDVISMKKAVQSVLQMRERYSTVTENSAEKVANSLVSDARTLRTKDNTSVIFLDFDNFTRLSCKPES 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2190 571 CDD PP2Cc 299 559 IPR001932 -
Glsi01g2190 571 SMART FHA_2 190 242 IPR000253 GO:0005515
Glsi01g2190 571 ProSiteProfiles PPM-type phosphatase domain profile. 287 559 IPR001932 -
Glsi01g2190 571 ProSiteProfiles Forkhead-associated (FHA) domain profile. 191 242 IPR000253 GO:0005515
Glsi01g2190 571 SMART PP2C_4 281 557 IPR001932 -
Glsi01g2190 571 Gene3D - 160 294 - -
Glsi01g2190 571 Pfam FHA domain 192 267 IPR000253 GO:0005515
Glsi01g2190 571 SUPERFAMILY PP2C-like 300 561 IPR036457 -
Glsi01g2190 571 SUPERFAMILY SMAD/FHA domain 164 274 IPR008984 GO:0005515
Glsi01g2190 571 Pfam Protein phosphatase 2C 300 552 IPR001932 -
Glsi01g2190 571 PANTHER PROTEIN PHOSPHATASE 2C 299 556 IPR015655 GO:0004722|GO:0006470
Glsi01g2190 571 Gene3D - 295 566 IPR036457 -
Glsi01g2190 571 CDD FHA_PP2C70-like 165 275 - -
Glsi01g2190 571 ProSitePatterns PPM-type phosphatase domain signature. 324 332 IPR000222 GO:0043169
Glsi01g2190 571 FunFam Protein phosphatase 2C 70 160 294 - -
Glsi01g2190 571 FunFam Protein phosphatase 2C 70 295 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2190 Glsi-ChrGlsi01 84963920 84970460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2190 1 560 PP2C-type Phosphatase Gene Family AT5G19280 59.593 0.0 677