Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2186 ATGGCAAATTTAACCTCATCCTCATCCTCCTCTTCTCCTCCTTTTCCATCTATATCCGGCATTCCACCCGTCTCAGCTTCATCGCCTTCAGCAGTTTTCGATGACTGCTCCGAGGACTCCTGCAGTATATGTCTAGAGCCCTTCAGCACCGATGACCCAGCTACTATTACGAGTTGCAAACATGAATATCATATGCATTGTATTCTTGATTGGTCACAGAGAAGTAAAGAGTGCCCAATATGTTGGCAGTTACTTGTCTTGAAAGACCCTGCCAGCCAAGAACTTCTAGCTGCTGTGAAGAATGAAAAACGATTAAGATCAAGAAACATATATTCATCTGCGTTCACTAATTCTAGTAGCTCCCTTGAACAGCCGAATGCTGCGCATGATAATTCTGGGTCAGATTACTCTGATTTTGATGAACAAATTATGCAGCACATAGTTGCTGCCGCGAGTAGAGTTAATTATGTTTGCAGAAGGGCAAGACAAAGATCATCTGGAGCTGGTCCATCAAAGTTTCTTGTTTTTAACTCTTCTGTGCAGCAAGTGTCCGGGGTGCAACCGGCGGTTGCAGCTTCACCGTCTGGGGGTAGTTCACCAACTTCTGGTGGACCATCCGCTGCTGACATTCAACCTGCTCCACCTTCTGCTTTTTCCCCTGATGCTGTTGTTGGAAGAAATACTATCCCTGAGAGCGATGCCCCTTTCAAACCCAGAGTTCTTTATAGCCGACCACCACCTGACACTTCCGAGATGTTCTCCTTCCCTGAGTCCATCAAATCCAAATTTTCTGCTGCCTCAGCCAGTACTCGTGGCCTAAAAGAGAAGTTTCTTGCTCATAATACCTCAGTAAAAGATCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCTGGTGTTGCACGGATGATTGAACGCCTTGATCTTACCTCGAAACGGGCAACTCCTCCTCTCATTCCCACCTGTACTGTGGGAACTTCAGGCTTCCCCTTAGAAGGGAAGACTGTCCAAGAGCATGGTATTATTGGGCAGTCTCCCAATAAAGAGAGCGAGGTTGTAGTTCGTGATACTAGTTCAGATGTACCCTTCCTCGTTTCCAGCATGGCTTCTGGTCGAGTAGAAGTTCCTACTCAAAGTGCTGAGGTTACTTCATACATCTTATCCCTAGTTTGA 1179 0.4614 MANLTSSSSSSSPPFPSISGIPPVSASSPSAVFDDCSEDSCSICLEPFSTDDPATITSCKHEYHMHCILDWSQRSKECPICWQLLVLKDPASQELLAAVKNEKRLRSRNIYSSAFTNSSSSLEQPNAAHDNSGSDYSDFDEQIMQHIVAAASRVNYVCRRARQRSSGAGPSKFLVFNSSVQQVSGVQPAVAASPSGGSSPTSGGPSAADIQPAPPSAFSPDAVVGRNTIPESDAPFKPRVLYSRPPPDTSEMFSFPESIKSKFSAASASTRGLKEKFLAHNTSVKDLSKGVQREMNAGIAGVARMIERLDLTSKRATPPLIPTCTVGTSGFPLEGKTVQEHGIIGQSPNKESEVVVRDTSSDVPFLVSSMASGRVEVPTQSAEVTSYILSLV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2186 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 86 IPR013083 -
Glsi01g2186 392 SMART ring_2 41 81 IPR001841 -
Glsi01g2186 392 ProSiteProfiles Zinc finger RING-type profile. 41 81 IPR001841 -
Glsi01g2186 392 MobiDBLite consensus disorder prediction 1 22 - -
Glsi01g2186 392 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 28 90 - -
Glsi01g2186 392 MobiDBLite consensus disorder prediction 117 136 - -
Glsi01g2186 392 SUPERFAMILY RING/U-box 36 88 - -
Glsi01g2186 392 FunFam E3 ubiquitin-protein ligase RHF1A 26 93 - -
Glsi01g2186 392 MobiDBLite consensus disorder prediction 187 206 - -
Glsi01g2186 392 Pfam Ring finger domain 39 81 IPR001841 -
Glsi01g2186 392 MobiDBLite consensus disorder prediction 187 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2186 Glsi-ChrGlsi01 84926667 84929423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2186 39 89 C3H Transcription Factor Family AT4G23450 47.059 1.65e-12 63.2