Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2177 ATGTCGTTGCTTAAAATTGCTCCAAAATCCACAACTTCAAATCCATTCGAATCCAAGACAAGAATGGATCAAAACCAGCATGGGCTGCCAGCAGGAGGCGCGTCTGGTACTGCTGCACAAGGGTCATATGGCATGAACCAGTATCAATCTAACCAAATGATGACACCTTCTCAGTCTCCTACTCAGGCAGCAGGTCTTTCTGCCTCTTCATCTTACCTGAGGGAGCAGCAACTTGCTCACCAGTACATCAATCAGCTACAGCAACAAGAATTGCAGCAACAACTCCACACCTTTTGGGCAAACCAGTACCAAGAAATTGAGCAGACTACTGAGTTTAAAAACCATAGCTTGCCTTTGGCTAGGATCAAAAAGATCATGAAGGCCGATGAGGATGTGAGAATGATATCAGCTGAAGCTCCAGTTATATTTGCCAGGGCATGTGAAATGTTCATTCTGGAGCTGACACTGAGGTCTTGGATTAACGCAGAGGAGAACAAAAGGAGGACACTTCAGAAGAATGACATTGCAGCGGCAATCACAAGGACTGATGTGTTTGATTTTCTGGTTGATATTGTCCCAAGGGATGACTTGAAGGATGAAATATTCTCAGGCGTTCCCAGAGGGGCAGCTGAGAACGTTCCTTACTATTATATGCCACCTCAGCATGTTGCAAGTCCTCCATTTGGTGCTCCAAAAATGATCATGGGTAGGCCTATAGCTGATCAAGTTCATTACGGGGGGCAGCCGGGTCAAATGTGGCCACAACAGCAAAATCCTTCTCCCAAATCAGATTCTTGA 798 0.4561 MSLLKIAPKSTTSNPFESKTRMDQNQHGLPAGGASGTAAQGSYGMNQYQSNQMMTPSQSPTQAAGLSASSSYLREQQLAHQYINQLQQQELQQQLHTFWANQYQEIEQTTEFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWINAEENKRRTLQKNDIAAAITRTDVFDFLVDIVPRDDLKDEIFSGVPRGAAENVPYYYMPPQHVASPPFGAPKMIMGRPIADQVHYGGQPGQMWPQQQNPSPKSDS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2177 265 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 64 212 - -
Glsi01g2177 265 Gene3D Histone, subunit A 78 194 IPR009072 GO:0046982
Glsi01g2177 265 FunFam Nuclear transcription factor Y subunit gamma 82 194 - -
Glsi01g2177 265 SUPERFAMILY Histone-fold 47 188 IPR009072 GO:0046982
Glsi01g2177 265 MobiDBLite consensus disorder prediction 249 265 - -
Glsi01g2177 265 MobiDBLite consensus disorder prediction 1 39 - -
Glsi01g2177 265 Pfam Core histone H2A/H2B/H3/H4 92 179 IPR007125 GO:0003677
Glsi01g2177 265 MobiDBLite consensus disorder prediction 1 25 - -
Glsi01g2177 265 MobiDBLite consensus disorder prediction 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2177 Glsi-ChrGlsi01 84878756 84881867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2177 36 259 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.307 1.87e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Glsi01g2177 CBFD_NFYB_HMF 5e-17 CL0012