Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2175 ATGGATTTTGAGCAGCCATATCCCCTCTTGCTGTCTCTCTTACTTGCCTTACTTCCACTTTCAACTTTTGCTCAAACTTACCGGAATGTTTCCTTGGGTACTTCCCTCACTGCAGGGAAAGATAGCTCCTTCTGGGCATCGCCATCTGGCGATTTTGCATTTGGTTTCCGAGAGATTGAGGAAGACGGGTTCTTAATAGCCATCTGGTTCAACAAAATACAGGAAAGAACTGTTGTCTGGTCGGCCAATGGAGAAAATCTTGCACCAAAGGGTTCTCAAGTTGAGCTCACCTCGGAGGGTTTCTTCCGGCTCAATGATCCCAGCGGTAAGCAGATATGGAATGCTAGCTCTTCAGGCAACGGAGTTGCTTATGCAGCCATGCTTGACACGGGTAACTTTGTGCTGGCTGGCCAAGATTCTCAATATTTGTGGCAGAGTTTTGATCAACCAACTGACACAATTTTACCAGGACAGGTTCTGAATCAACCTGCTCGACTGGTTTCACGCTATTTGGAAACTAATTATTCAAGGGGAAGATTCCAGTTTGTACTACAGGGTGATGGGAATCTCGTGCTTTACACAACTAATTTCCCATTGGATTCTGTAAATTCTGCTTATTGGTCTACCCAGGTTTTAGGCAGTGACTTTGCATTGGTCTTCAACCAATCGGGCTATATCTTTGTTCAGAGTAGCAACGGAAGTATTATTAATACAATATCATCGAATGTTTCCTCTACCCGAGATTTCTACCAGAGAGCTATTCTTGATTATGATGGAGTTTTCAGGCAATCTATCTACCCCAAGATCGGTAGTAGTTCCAGTCCCACAGGCTGGTTAACTTCGTATTTCCTACCCCAAGATATTTGTTCTATTGATGAAGATATAGGAAGTGGAGCTTGTGGATTCAACAGCTACTGTATGCATGATGATGGGGCCAAAAGCTGCCACTGTCCAGCCGGTTACAGCTTCATTGATCCAAATGATGAGATGAAAGGATGCAAACAGAACTTTATTTCACAAAGTTGTGATGAAACTTCTACAGAGACACATCTCTTTGATTTTTATGAGATGCAAAATACGAATTGGCCACAAACTGACTATGGACATTTTGAAGTAGTAACTGAGGATTGGTGCAGAGAGGCTTGCTTGAGTGACTGTTTTTGTGCCGTTGCTATTTTCGGAGCAGGGCAATGCTGGAAAAAGAAGCTACCTCTCTCTAATGGAAGAATAAATAATCCTTCTGAGGGAGGGAAAGCTCTAATCAAAATAAGAAAAGATAATTCTACTCTGAATTATGGGGATCCTGGTAATAAGAATGATGGGTCCAAACTGATTATCATTGGATCAGCACTGTTAGGTAGTTCAGTGTTATTGATCTTACTCTTCTTAGTGGCAGCTTTTCTGGTTGCATACCGGTTTAGCCACAAGAATCCTACGGTGCATCGAACTGTCCAGTTCTCGTCGAGCATGAATATTAGAAGTTTCACTTATGAAGAGTTAAGGAGAGCAACAAATGGGTTCACAGAAGAACTGGGTCGTGGTGCATTTGCAACAGTTTACAAAGGAGTTTTATTAGACCTTCCAGGGAACCTCGTTGCTGTGAAAAAATTGAAAATGGTAAAAGAAAGCGAGGATGAATTTAAAGCAGAAGTGACTGCAATTGGCCGAACACACCATAGGAATTTGGTCCAACTTCTGGGATTCTGTAATGAAGGGGAGAACAGGCTACTTGTGTACGAATTCATGAGCAATGGAAGTTTAGCAAATTTCCTTTTTGAAGACCAGAGGCCAAGCTGGTATCAAAGAGTGCAAATTGCAATAGGAACAGCCAGAGGACTCTTGTACTTGCATGAAGAGTGCAGCACTCAGATCATCCACTGTGATATCAAGCCCCAGAACGTCTTGCTTGATGACTCTTACACAGCAAAAATCTCAGACTTCGGTTTAGCGAAGCTATTGAAGATTGACCAGAATGGAACTAAAACGAGGATCAGGGGAACTAAAGGGTATGTTGCAGCGGAGTGGTTTAAGAATGTGCCCATTACCATGAAGGTGGATGTTTACAGCTATGGAGTTTTGTTATTGGAGCTCATCTGCTGCAGGAAGAGCTTTGATATGGAGATTGAGGATGAAAAAGAGATGGTACTGATGGATTGGGCATGTGATTGCTTCCAGGATAGGAAACTTGACGTGCTGGTTAAAGATGATAAGGAGGCGTTAGACGACATGAAGAGGGTAGAAAAGTATGTGATGATCGCTATCTGGTGCACCCAGGAGGATCCATCACTGAGACCCACCATGAAGCAGGTCTTACTGATGCTTGAAGGGTTTATAGATGTATCGGATCCCCCTTATCCACTCTCCTTTACATGTTAG 2376 0.4289 MDFEQPYPLLLSLLLALLPLSTFAQTYRNVSLGTSLTAGKDSSFWASPSGDFAFGFREIEEDGFLIAIWFNKIQERTVVWSANGENLAPKGSQVELTSEGFFRLNDPSGKQIWNASSSGNGVAYAAMLDTGNFVLAGQDSQYLWQSFDQPTDTILPGQVLNQPARLVSRYLETNYSRGRFQFVLQGDGNLVLYTTNFPLDSVNSAYWSTQVLGSDFALVFNQSGYIFVQSSNGSIINTISSNVSSTRDFYQRAILDYDGVFRQSIYPKIGSSSSPTGWLTSYFLPQDICSIDEDIGSGACGFNSYCMHDDGAKSCHCPAGYSFIDPNDEMKGCKQNFISQSCDETSTETHLFDFYEMQNTNWPQTDYGHFEVVTEDWCREACLSDCFCAVAIFGAGQCWKKKLPLSNGRINNPSEGGKALIKIRKDNSTLNYGDPGNKNDGSKLIIIGSALLGSSVLLILLFLVAAFLVAYRFSHKNPTVHRTVQFSSSMNIRSFTYEELRRATNGFTEELGRGAFATVYKGVLLDLPGNLVAVKKLKMVKESEDEFKAEVTAIGRTHHRNLVQLLGFCNEGENRLLVYEFMSNGSLANFLFEDQRPSWYQRVQIAIGTARGLLYLHEECSTQIIHCDIKPQNVLLDDSYTAKISDFGLAKLLKIDQNGTKTRIRGTKGYVAAEWFKNVPITMKVDVYSYGVLLLELICCRKSFDMEIEDEKEMVLMDWACDCFQDRKLDVLVKDDKEALDDMKRVEKYVMIAIWCTQEDPSLRPTMKQVLLMLEGFIDVSDPPYPLSFTC 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2175 791 FunFam S-receptor-like serine/threonine-protein kinase 474 581 - -
Glsi01g2175 791 CDD STKc_IRAK 511 777 - -
Glsi01g2175 791 CDD B_lectin 50 150 IPR001480 -
Glsi01g2175 791 FunFam Uncharacterized protein 148 242 - -
Glsi01g2175 791 Gene3D Transferase(Phosphotransferase) domain 1 582 779 - -
Glsi01g2175 791 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 35 786 - -
Glsi01g2175 791 ProSiteProfiles Protein kinase domain profile. 505 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2175 791 Pfam Protein kinase domain 509 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2175 791 SMART serkin_6 505 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2175 791 Pfam D-mannose binding lectin 77 161 IPR001480 -
Glsi01g2175 791 Gene3D - 150 270 IPR036426 -
Glsi01g2175 791 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 782 - -
Glsi01g2175 791 ProSitePatterns Protein kinases ATP-binding region signature. 511 536 IPR017441 GO:0005524
Glsi01g2175 791 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 24 147 - -
Glsi01g2175 791 SUPERFAMILY alpha-D-mannose-specific plant lectins 173 260 IPR036426 -
Glsi01g2175 791 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 209 IPR036426 -
Glsi01g2175 791 CDD PAN_AP_plant 340 423 - -
Glsi01g2175 791 SUPERFAMILY Protein kinase-like (PK-like) 482 775 IPR011009 -
Glsi01g2175 791 Gene3D - 27 149 IPR036426 -
Glsi01g2175 791 ProSiteProfiles Bulb-type lectin domain profile. 27 148 IPR001480 -
Glsi01g2175 791 Gene3D Phosphorylase Kinase; domain 1 469 581 - -
Glsi01g2175 791 PIRSF SRK 4 791 IPR024171 GO:0004674
Glsi01g2175 791 SMART blect_4 36 150 IPR001480 -
Glsi01g2175 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2175 Glsi-ChrGlsi01 84847072 84849447 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2175 491 776 Receptor kinase-like Gene Family AT1G60800 43.537 1.51e-70 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Glsi01g2175 Pkinase 1.7e-48 CL0016