Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2173 ATGGCTTTTGAGCAGCCATATCCCCTCTTGTTGTCTCTCTTACTTGCCTTACTTCCACTATGCACTTTGGCTCAAACTTACAGAAATGTTTCCTTGGGCACTTCCCTCACCGCAGTGAAAGATAGCTCCTTCTGGGCATCGCCATCTGCTGATTTTGCATTTGGTTTCCAACAGATTGAGGAAGATGGGTTCTTACTAGCCATCTGGTTCAACAAAATACCAGAAAGAACTGTTGTCTGGTCGGCTAATGGAGAAAATCTTGCACCAAAGGGTTCCAAAGTTGAGCTCACTTCAGATGGTTTATTCCGGCTCAATGGTCCCAGTGGTAAGCAGATATGGAATGCTAGCTCCTCGGGCAATGGAGTTGCTTATGCAGCCATGCTTGATACGGGTAACTTCGTGCTGGCTCGCCAAAATTCTCAATATTTGTGGCAGAGTTTTGATCAACCAAGTGACACAATTTTACCCGGACAGGTTCTGAATCAACCTGCTCGACTGGTTTCACGCTATTTGGAAACTAATTACTCAAGGGGAAGATTCCAGTTTGTACTACAGGGTGATGGGAATCTTGTGCTTTACACTACTCATTTCCCATTGGATTCTGTAAATTTTGCTTATTGGACTACCCAGGTTTTTGGCAGTAACTTTGCATTGGTCTTCAACCAATCAGGCTATATTTTTGTTCAGAGAAGTAACGGAAGTATAATTAATACAATATCATCAAATGCTCCCTCCACACAAGATTTCTACCAGAGAGCTATTATTGATTATGATGGAGTTTTCCGGCATTACTTCTACCCCAAGAGCAGTAATTTCAGTACTGGAAGGTCCATGTCCTGGTCAATTTCGTCCATCACACCTTCAAATATATGTTTGAGAATTAAGGAAGAGACAGGAAGTGGAGCTTGTGGATTCAACAGCTACTGCATGCATGATGGGACCAAAAGCTGCCACTGTCCATCTGGTTACACCTTCCTTGATCCAAATGATGAGATGAAAGGATGCAAACAGAACTTTGTTTCACAAAGTTGTGATGAAAATTCTACAGAGACACATCTCTTTGGTTTCACTGAGATGCAAAATACGAATTGGCCTCAATCTGACTACGAACATTTTCAAGACGTAAGTGAGGATTGGTGCAGAGAGGCTTGCTTGGGTGACTGTTTTTGTGCCGTCGCTATTTTCGGAGGAGGGGAATGCTGGAAGAAGAAGCTCCCTCTCTCTAATGGAAGAACTGATTCTTCTGAGGGAGGGAAAGCTCTAATCAAAATAAGAATAGATAATTCTACTTTGAAATATGGGGATACTGATAAAAATAAAGATAAGCTAATTATTGCTGGATCGGTGCTTTTAAGCAGTTCGGTGTTATTGAATTTGCTCTTCTTAGCAGCGGTTGCATATTGGTTTGGCCACAAGAGTCCTAAGGTGCACAAAACTGTCCAATTCTCGCCAGGCATGAATCTTAGGAGTTTCACTTATGAGGAGTTAAAGAAAGCAACAAATGGGTTCACGGAAGAACTGGGTCGTGGTGCATTTGCAACAGTTTACAAAGGAGTTTTATTAGACCTTCCGGGGAACTTTGTTGCTGTGAAAAAATTGAATGATATGGTGAAAGAAAGCGAGGAGGAATTCAAGGCAGAAGTGAGGGCAATTGGACAAACACACCATAGGAATTTGGTCCAACTCCTGGGATTTTGTAATGAAGGGCAGCACAGGCTACTTGTGTACGAATTCATGAGCAATGGAAGTTTAGCAAGTTTCCTTTTTGAAGACCAGAGGCCAAGTTGGTATCAAAGAGTGCAAATTGCTATAGGAACAGCGAGGGGACTTTTGTACTTGCATGAAGAGTGCAGCACTCAGATCATCCACTGTGATATCAAGCCTCAAAATGTCTTGCTTGATGATTCTTACACAGCCAAAATCTCAGACTTAGGTTTAGCGAAGCTATTGAAGACTGACCAGGCTGTAAGTACAACGAGGATCAGGGGAACTAAAGGTTATGTTGCTGTGGAGTGGTTTAAAAACATTCCAATTACCATGAAGGTAGATGTTTACAGCTATGGAGTTCTGTTACTTGAGCTCATCTGCTGCAGGAGGAACTTTGATATGAAGATTGAGGATGAGAACGAGATGGTGCTGATTGATTGGGCATACGATTGCTTTCACGAAAGGAGACTTCATGTATTGGTGGAAGATGATAAGGAGGCGTTGGACGACATGAAGAGGGTGGAAAAGTATGTGATGATAGCTATCTGGTGCACTCAGGAGGATCCATCACTGAGACCCGCCATGAAGCAGGTCTTACAGATGCTTGAAGGATCTATAGATGTATCGAATCCCCCTGATCCACTCTCCTATACAAGTTCAATGTAA 2373 0.4256 MAFEQPYPLLLSLLLALLPLCTLAQTYRNVSLGTSLTAVKDSSFWASPSADFAFGFQQIEEDGFLLAIWFNKIPERTVVWSANGENLAPKGSKVELTSDGLFRLNGPSGKQIWNASSSGNGVAYAAMLDTGNFVLARQNSQYLWQSFDQPSDTILPGQVLNQPARLVSRYLETNYSRGRFQFVLQGDGNLVLYTTHFPLDSVNFAYWTTQVFGSNFALVFNQSGYIFVQRSNGSIINTISSNAPSTQDFYQRAIIDYDGVFRHYFYPKSSNFSTGRSMSWSISSITPSNICLRIKEETGSGACGFNSYCMHDGTKSCHCPSGYTFLDPNDEMKGCKQNFVSQSCDENSTETHLFGFTEMQNTNWPQSDYEHFQDVSEDWCREACLGDCFCAVAIFGGGECWKKKLPLSNGRTDSSEGGKALIKIRIDNSTLKYGDTDKNKDKLIIAGSVLLSSSVLLNLLFLAAVAYWFGHKSPKVHKTVQFSPGMNLRSFTYEELKKATNGFTEELGRGAFATVYKGVLLDLPGNFVAVKKLNDMVKESEEEFKAEVRAIGQTHHRNLVQLLGFCNEGQHRLLVYEFMSNGSLASFLFEDQRPSWYQRVQIAIGTARGLLYLHEECSTQIIHCDIKPQNVLLDDSYTAKISDLGLAKLLKTDQAVSTTRIRGTKGYVAVEWFKNIPITMKVDVYSYGVLLLELICCRRNFDMKIEDENEMVLIDWAYDCFHERRLHVLVEDDKEALDDMKRVEKYVMIAIWCTQEDPSLRPAMKQVLQMLEGSIDVSNPPDPLSYTSSM 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2173 790 SUPERFAMILY Protein kinase-like (PK-like) 479 772 IPR011009 -
Glsi01g2173 790 ProSiteProfiles Bulb-type lectin domain profile. 30 148 IPR001480 -
Glsi01g2173 790 Pfam D-mannose binding lectin 77 161 IPR001480 -
Glsi01g2173 790 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 579 779 - -
Glsi01g2173 790 PIRSF SRK 2 790 IPR024171 GO:0004674
Glsi01g2173 790 FunFam Uncharacterized protein 148 242 - -
Glsi01g2173 790 Coils Coil 530 550 - -
Glsi01g2173 790 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 24 147 - -
Glsi01g2173 790 FunFam Serine/threonine-protein kinase 151 294 - -
Glsi01g2173 790 CDD PAN_AP_plant 340 424 - -
Glsi01g2173 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Glsi01g2173 790 SUPERFAMILY alpha-D-mannose-specific plant lectins 174 266 IPR036426 -
Glsi01g2173 790 Pfam Protein kinase domain 505 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2173 790 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 209 IPR036426 -
Glsi01g2173 790 CDD STKc_IRAK 507 773 - -
Glsi01g2173 790 Gene3D - 31 149 IPR036426 -
Glsi01g2173 790 Gene3D - 150 271 IPR036426 -
Glsi01g2173 790 ProSitePatterns Protein kinases ATP-binding region signature. 507 532 IPR017441 GO:0005524
Glsi01g2173 790 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 36 783 - -
Glsi01g2173 790 CDD B_lectin 45 150 IPR001480 -
Glsi01g2173 790 ProSiteProfiles Protein kinase domain profile. 501 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2173 790 SMART blect_4 36 150 IPR001480 -
Glsi01g2173 790 SMART serkin_6 501 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2173 790 FunFam S-receptor-like serine/threonine-protein kinase 471 578 - -
Glsi01g2173 790 Gene3D Phosphorylase Kinase; domain 1 468 578 - -
Glsi01g2173 790 Gene3D Transferase(Phosphotransferase) domain 1 579 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2173 Glsi-ChrGlsi01 84827089 84829461 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2173 481 773 Receptor kinase-like Gene Family AT1G60800 42.574 1.79e-70 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Glsi01g2173 Pkinase 8.9e-47 CL0016