Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2162 ATGGGAACTTCTTGGAGTAGCAGAAGAAGAGACAATTATTTTCTTAACCCTCCTCCTCCTCCTCCCCCACATCTTCCACCACCTTACCACTACTCTGCAGAATCTCATCCTGCTCCTGCTCCTCCCCCTCCACCTCCACTTCCACCTCCGCCGCAAGGATACTACTTTACCTCAACCACGCCTTATACTCTGCAGAACAATAGTTATATCACCCCCCCTCCTCTACCCCCACCACCTCCTCAGACCCATCATCGCTTCTGTTACACAAATGTGTATAGCAGTTGTTCCAACCATGCCAATTCTATGGTGGGTCAGTTCCATTACCACCCTTATTATTTAAATCATGCTAGTGGGTGGCCTGCAATTCATCCTCCACTTGGTCTTGTCGACCCACCACCACCGTATGTTGATCATCAAACCGCTAAGAAGATCAGGAACGATGTCAACGTGCATAAAGATACGTTGCGGCTGGAGGTAGATGAGCTCAACCCTGATCAGCAGTTGGTTTCATTCGTTTTCGATGCCTTATATGATGGGTGCATTACTATATTCTACTTTGCAAAGGAAGAAGAAAAATGTAGGTTTGTACCACTGTTTCCTGATGTATTTGAGCCAATCAGAGTCCCCTTTTGGAAAGGAGTCGGACAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGACTTAGGGTTCTTTGAGTTGGATGATCTCTCAAAACCTTCACCTGAAGATGTCTTTCCTCTTGTAATATGTGCTGAAACATGTCTGGGAAATCCTTCAGCAGATGAAAATCTTGGTGATTCCATGCTAGATGTATCCTCTCACATGCAGATTACTCAAGCCATTCTTGAGAAAGACAATGGTGGTGTTACTTTCCAGGTAAAAGTAGCCAGGCAGATTCTGTGGATTGATGGTGTTCGTTACGAGTTGAGAGAGTTATATGGAATAGGGGGCTCGGCAGCAGCAGGTTTTGATGACAATGATCCTGGGAAGGAGTGTGTAATATGCTTGACCAAACCAAGAGACACCGCTGTCTTACCTTGTAGACATATGTGTATGTGCGGTGAGTGTGCACAAGCTTTGCGGCTTCAATCAAATAAATGCCCTATATGCCGTCAATCCATTGAGGAACTCATAGAGATCAAAATAAACAATGTTGATATGTTTTCCTTAGCTTTATCTGAGTGCTATTTGACAGAAGGTCTTTGTATAGCTTTTGCAGAATAA 1224 0.4436 MGTSWSSRRRDNYFLNPPPPPPPHLPPPYHYSAESHPAPAPPPPPPLPPPPQGYYFTSTTPYTLQNNSYITPPPLPPPPPQTHHRFCYTNVYSSCSNHANSMVGQFHYHPYYLNHASGWPAIHPPLGLVDPPPPYVDHQTAKKIRNDVNVHKDTLRLEVDELNPDQQLVSFVFDALYDGCITIFYFAKEEEKCRFVPLFPDVFEPIRVPFWKGVGQKFCQPSGTGIDLGFFELDDLSKPSPEDVFPLVICAETCLGNPSADENLGDSMLDVSSHMQITQAILEKDNGGVTFQVKVARQILWIDGVRYELRELYGIGGSAAAGFDDNDPGKECVICLTKPRDTAVLPCRHMCMCGECAQALRLQSNKCPICRQSIEELIEIKINNVDMFSLALSECYLTEGLCIAFAE 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2162 407 CDD mRING-HC-C3HC5_MGRN1-like 330 371 IPR045195 -
Glsi01g2162 407 PANTHER MAHOGUNIN 1 384 IPR045194 GO:0061630
Glsi01g2162 407 MobiDBLite consensus disorder prediction 1 58 - -
Glsi01g2162 407 SUPERFAMILY RING/U-box 326 377 - -
Glsi01g2162 407 ProSiteProfiles Zinc finger RING-type profile. 332 371 IPR001841 -
Glsi01g2162 407 SMART ring_2 332 370 IPR001841 -
Glsi01g2162 407 MobiDBLite consensus disorder prediction 14 55 - -
Glsi01g2162 407 Pfam Zinc finger, C3HC4 type (RING finger) 330 376 - -
Glsi01g2162 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 390 IPR013083 -
Glsi01g2162 407 FunFam probable E3 ubiquitin-protein ligase LOG2 316 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2162 Glsi-ChrGlsi01 84693132 84696856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2162 104 386 C3H Transcription Factor Family AT3G06140 58.644 8.47e-112 330