Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2158 ATGGCACTACTTGGTACATTTACATCGCAAATTTTACAAGCTCAGTTTCCCAGATGTTCCGCTATTTCGAAACAGTCAATCTCAGAGACTCTGTTTGTAAAGCGCCCACAATATCCAATGTTTTCTTCAGTGTCGATTCCTGCCTCATCCTCCACTCTTCGTTATGCGCCCCTTACATGGTTTTGCTGCAGTTCTGAGGAATACAATACGTCTTCTCCAGCCAAAATCTTCATTAAAGGGCTTCCTGTGTCAACTTCGGAAGGACGTTTGGTGAAGGCATTTTCAGAGTTTGGCCAAGTTAGTCGAGTCGAGCTTCCCATGGATAAAGGATCTGGGAAATTCCTAGGATTTGCATATATTTGGTTTGCCGAGGAAGAGTCTGCACAATTGGCTGTGAAAGAGATGAATGGAAAGTTTTTCGATGGCAGGTTTATTTATGTTACAATTGCAAAGCCTGGATCATCGAAAAATTGGAGGAAGAGAGCTCCATACAAATTTTGA 501 0.4232 MALLGTFTSQILQAQFPRCSAISKQSISETLFVKRPQYPMFSSVSIPASSSTLRYAPLTWFCCSSEEYNTSSPAKIFIKGLPVSTSEGRLVKAFSEFGQVSRVELPMDKGSGKFLGFAYIWFAEEESAQLAVKEMNGKFFDGRFIYVTIAKPGSSKNWRKRAPYKF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2158 166 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 145 IPR000504 GO:0003723
Glsi01g2158 166 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 152 IPR000504 GO:0003723
Glsi01g2158 166 SMART rrm1_1 75 148 IPR000504 GO:0003723
Glsi01g2158 166 CDD RRM_SF 76 147 - -
Glsi01g2158 166 Gene3D - 64 165 IPR012677 -
Glsi01g2158 166 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 60 160 - -
Glsi01g2158 166 SUPERFAMILY RNA-binding domain, RBD 67 161 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2158 Glsi-ChrGlsi01 84647282 84648715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2158 61 165 Eukaryotic Initiation Factors Gene Family AT4G34110 30.556 1.18e-09 54.3