LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi01g2117	ATGCATACCATATTAGACTTGAAATCTTTAGATATTGTGGAGCAATGCGTACCTGAGTGTTCTCCGAGAGGTGAACTTGAGGAGTGCTCAACAAGTTTAGAACCTAAATCCCCTTATTCCAAGGCCAGCACTTCTGATTCAGAGAGTCAACCAGATTTAAGAGGCAATACCCAATGGCATGGTTTCATTCGTTTACTGAAGAAGGGGCCCCGAATGCGCTTCCAACCCTTTCAACAATTTAAAAATGTTCCAAAACTCACCAGAAGGAAAAGTAAGAGATTCAGGGAGGACCAGATCCCAACCATAAATTCTCCACAACTAAATTCACCCCAATTCCATTCTTCACCTCTGAAGTCAGCTTTTGACACTGAGCTTTACTGCTTCAAATCTTCCTGGAAAAATTTCAGTCTTTCAGAGATCCTGGCTGCAACCAACAACTTCAGCCACGAGAATTTGATTGGTGAGGGAGGTTATGCTGAGGTTTACAAAGGTAAATTGGAAGATGGGCAGTTTGTTGCTATTAAACGGCTGACAAGAGGAAGCCAAGAAGAAATGACCGCAGATTTCTTGTCGGAGCTTGGAATTATAGTGCATGTGGACCATCCCAACATTGCTAGATTGATTGGATATGGTGTTGAAGGGGGAATGTATCTTGTTCTTCAGTTGTCTCCACATGGCAGCCTATCATCCATACTTTATGGACCTCGACAGAAACTGGATTGGAGCATCAGATATAAGATTGCTTTTGGGGCTGCTGAGGGCCTTCGCTATCTGCATGAGGAATGTCAAAGAAGGATAATTCACAGAGATATCAAGGCTTCTAATATTTTGCTCTCAGAGGATTTTCAACCTCAGTGTGTAACTTCAATCTTATGCCAGATATCTGATTTTGGACTTGCAAAATGGTTACCTGACCAATGGACTCATCATACTATCTCCAAAATTGAAGGCACGTTCGGCTACCTACCTCCTGAATTCTTCATGCATGGGTTAGTAGATGAAAAGACTGATGTCTATGCTTATGGAGTGCTATTATTGGAGCTCATTACTGGACGACAAGCTTTGGATAGCTCACAAAAAAGTTTGGTGATGTGGGCAAAACCTTTGCTATCTACAAATAACATCAAAGAGCTAGTTGATCCATGTCTGTTAAATGCTTATGATGAAGAACAGATGAATCATGTAGTTTTTACAGCTTCATTGTGTATAGATCAATCTTCAATTCTTCGACCACAAATGAGCGAGGTATTACGGATTCTAAGAGGTGATGAAGACGGCTTGGAGCTCATAAAAGCACGCCAGAATTCCAAACTTCAGAGGACGTACTCTGAAGAACTCTTAGATGCAGAAGAGTACAACTCAACCAAGTTTTTGAATGATATAGATCGACATATGGAGACTCTTAAAGGCAACTCCAGTATAGAAGATACACTTTGA	1437	0.4113	MHTILDLKSLDIVEQCVPECSPRGELEECSTSLEPKSPYSKASTSDSESQPDLRGNTQWHGFIRLLKKGPRMRFQPFQQFKNVPKLTRRKSKRFREDQIPTINSPQLNSPQFHSSPLKSAFDTELYCFKSSWKNFSLSEILAATNNFSHENLIGEGGYAEVYKGKLEDGQFVAIKRLTRGSQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMYLVLQLSPHGSLSSILYGPRQKLDWSIRYKIAFGAAEGLRYLHEECQRRIIHRDIKASNILLSEDFQPQCVTSILCQISDFGLAKWLPDQWTHHTISKIEGTFGYLPPEFFMHGLVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSTNNIKELVDPCLLNAYDEEQMNHVVFTASLCIDQSSILRPQMSEVLRILRGDEDGLELIKARQNSKLQRTYSEELLDAEEYNSTKFLNDIDRHMETLKGNSSIEDTL	478

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi01g2117	478	ProSiteProfiles	Protein kinase domain profile.	147	427	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi01g2117	478	SMART	serkin_6	147	397	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi01g2117	478	Gene3D	Transferase(Phosphotransferase) domain 1	224	444	-	-
	Glsi01g2117	478	SUPERFAMILY	Protein kinase-like (PK-like)	127	420	IPR011009	-
	Glsi01g2117	478	MobiDBLite	consensus disorder prediction	33	55	-	-
	Glsi01g2117	478	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	266	278	IPR008271	GO:0004672\|GO:0006468
	Glsi01g2117	478	Gene3D	Phosphorylase Kinase; domain 1	110	221	-	-
	Glsi01g2117	478	MobiDBLite	consensus disorder prediction	28	55	-	-
	Glsi01g2117	478	Pfam	Protein tyrosine and serine/threonine kinase	150	364	IPR001245	GO:0004672\|GO:0006468
	Glsi01g2117	478	FunFam	Receptor-like cytosolic serine/threonine-protein kinase RBK2	117	221	-	-
	Glsi01g2117	478	ProSitePatterns	Protein kinases ATP-binding region signature.	153	175	IPR017441	GO:0005524
	Glsi01g2117	478	PANTHER	OS08G0249100 PROTEIN	19	464	IPR046958	-
	Glsi01g2117	478	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK2	224	434	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi01g2117	Glsi-ChrGlsi01	84261703	84264425	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi01g2117	118	422	Receptor kinase-like Gene Family	AT1G53420	41.534	4.18e-70	238

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Glsi01g2117		PK_Tyr_Ser-Thr	2.5e-40	CL0016