Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2109 ATGGAACCCCTCTCTGCTTCTCCACCACCCGAACAATCCTCGTTGTCATTGCCGGAGCCACGGCCTCCATCGGTTGTCGTTCATCGAGAAATGTTCACGGAGATGGAGGCACGACCGAGGTTGACAGAAGATCATTCATCAGTTTGGGACCTGGGTTGTCTGTTAGACTTCAACTTGGACGATCAAATAGCTATCTCCGTAGACTATGACCATAATTCAGAAGTTCCTGAACCGCTGGAACTTCCTCCACAAGAGACTCGGATTACGGAGAGGGTACGAAAGCGAGACCCTAGGCTAACTTGCTCCAATTATCTCGCGGGTTGGGTCCCGTGTGCGTGCCCGGAAATGGATGAGAAGCTCGAGGAAGAAGGCTTAATCGGTAATAAGCGGGCTCGGATAAAGCGTGCATCAGCTGGGGTTGCGCGGTGCCAGGTACGTGGGTGCGAGGCAGATATTAGTGAGCTCAAGGGATATCATCGGAGGCATAGGATTTGTTTGAGGTGTGCAAATGCTAGTTCAGTTATGATTGATGGGGAGGCAAAGAGATACTGCCAACAGTGTGGAAAGTTTCACATATTATCAGATTTTGATGAAGGTAAACGAAGCTGTAGAAGAAAATTAGAGCGCCATAATAACCGAAGACGAAGAAAGCCTACAAATTCCAGAGCAGCAGCTGATCATGAACTTCAACCTGTTACACGGACTGAGGATGTCAAATTTGATGGTCAAGCAGGAAAAGCTTGTTCATATTTGAGCAGCGAGATAAATGAAAATGGAGCTTTATTGGAGCATCAAGTTGTACATATTAGCCCATGCTTAGCTCCTGATAGCCAGAATATTAATAGTGATGGTGTTGTATCTTATGTTGCTTCTGGTGAAACTAAAGCGAATAGTGGAAAAGAATCAAAAGATAATTCCAATTTTTCTAATTCACCATCATATTGTGACAAGAGTGGTTACACATCTATGTGCCCAACAGGTCGGATCTCCTTTAAGCTCTACGATTGGAATCCTGCAGAGTTTCCCAGAAGGCTACGACATCAAATATTTGAATGGTTGGCCAATATGCCTGTAGAGCTGGAGGGATATATCCGCCCTGGATGTACAATCCTGACAACTTTTATTGCAATGCCAAAGGTTATGTGGATAAACTTACTTGATGACCCTCCTTACTATGTGCGCGGCCTTGTTTCTCCTGGAAAAATGCTATCTAGAAGGGGTGCCATACTAGTTCATCTTAATGACATGATTTTCCATGTTATAAAAGATGAAACTTCTGTGATGAAAGTTGAGATTAACAAGCAATCGCCAAGGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGCAAACCTATGGAGTTTGTTGTTTGTGGAAGTAACTTGCTGCAACCTAAGTTTCGGCTTCTTCTATCTTTTTCTGGGGAGTATCTGAAGTATGAGTATTTTGTTTCATATCCACATAACTGGACTGGAGACAACATTTCTTGTGCTTTTGACAATCAGTTATACAAGATATATGTCCCTCATACGGAGCCAAATCTCATTGGGCCTGCATTTATTGAGGTGGAGAATGAGTCTGGCTTGTCCAACTTCATTCCTGTACTCGTTGGGGACCAAGGAATTTGCTCTGAAATGAAGACATTGCAACAAAACTTGGATGTGTCTATCTTTTCTAAACGGTTCCCATCTACATCTGGTGGTTCTATCTGCAGTTCATGTGAAGCTTTTGCATTAAGACATACAGCATCGTCGGACTTACTTTTAGATATAGCATGGTTGCTCAAGGATCCTACCTCAGACAAATTTCATAGAGCTAGGACAGCTTTACAAATTCAAAGATTTTATTCTTTGTTGGACTTTCTGATATGCATTGATTCAACCATCATTTTGGAAAAAATATTACAGAATTTGATGATTTTAGCAGAAAACATGAAATCAAGCAATTTGATTAATAGGTTGAGTGACTTTGACATCACGCTCTTACTGAAACGCCTGTGGTATGCTAGAGATGTCCTTTATCAGAAAAGTCAGAAAGTTAGATGTTCAGTTATGCCATTTGTGTACTCTGAAATGGAAGGCTATAAAGTTGCTGAAAGCCACTCTCTGGACAACAGTCAGGGTGCTGAGTCAAGAGCAGATGCTAAGTTGGGAGTACTAACAAATCCAATTTCTAATGGCAAAAGTGAAAGGATACCACTTTTGAAGAGGGAGGAGGTTATAATGAATATGGAAAAGTTGCCTAGAAAATCCGGTCACTGGCATCTTGCCGGGGGAATCCTTAGCTCTCGGCGGGGCATCCTTGTGATTGTTTCAGTTGCTGTTTGTGTTGGGGTATGCGCAGCCCTCTTTCATCATGAGAGAGTTGGTGAGTTAGCAGTATCCATTAGAAGATGCTTGTTTAACTATTCGTAG 2415 0.4253 MEPLSASPPPEQSSLSLPEPRPPSVVVHREMFTEMEARPRLTEDHSSVWDLGCLLDFNLDDQIAISVDYDHNSEVPEPLELPPQETRITERVRKRDPRLTCSNYLAGWVPCACPEMDEKLEEEGLIGNKRARIKRASAGVARCQVRGCEADISELKGYHRRHRICLRCANASSVMIDGEAKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKPTNSRAAADHELQPVTRTEDVKFDGQAGKACSYLSSEINENGALLEHQVVHISPCLAPDSQNINSDGVVSYVASGETKANSGKESKDNSNFSNSPSYCDKSGYTSMCPTGRISFKLYDWNPAEFPRRLRHQIFEWLANMPVELEGYIRPGCTILTTFIAMPKVMWINLLDDPPYYVRGLVSPGKMLSRRGAILVHLNDMIFHVIKDETSVMKVEINKQSPRLHYVHPTYFEAGKPMEFVVCGSNLLQPKFRLLLSFSGEYLKYEYFVSYPHNWTGDNISCAFDNQLYKIYVPHTEPNLIGPAFIEVENESGLSNFIPVLVGDQGICSEMKTLQQNLDVSIFSKRFPSTSGGSICSSCEAFALRHTASSDLLLDIAWLLKDPTSDKFHRARTALQIQRFYSLLDFLICIDSTIILEKILQNLMILAENMKSSNLINRLSDFDITLLLKRLWYARDVLYQKSQKVRCSVMPFVYSEMEGYKVAESHSLDNSQGAESRADAKLGVLTNPISNGKSERIPLLKREEVIMNMEKLPRKSGHWHLAGGILSSRRGILVIVSVAVCVGVCAALFHHERVGELAVSIRRCLFNYS 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2109 804 MobiDBLite consensus disorder prediction 207 236 - -
Glsi01g2109 804 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 128 600 IPR044817 GO:0003677
Glsi01g2109 804 MobiDBLite consensus disorder prediction 219 236 - -
Glsi01g2109 804 Pfam SBP domain 143 217 IPR004333 GO:0003677
Glsi01g2109 804 MobiDBLite consensus disorder prediction 1 23 - -
Glsi01g2109 804 Gene3D - 139 204 IPR036893 GO:0003677|GO:0005634
Glsi01g2109 804 ProSiteProfiles Zinc finger SBP-type profile. 140 217 IPR004333 GO:0003677
Glsi01g2109 804 SUPERFAMILY SBT domain 141 220 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2109 Glsi-ChrGlsi01 84204596 84212834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2109 46 797 SBP-box Gene Family AT5G18830 46.144 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi01g2109 SBP 8.8e-28 No_clan