Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2108 ATGGCGAGATACCGAAGCCGGAGCAGAAGCTACAGCCCTCGTCGGCGAAGCAGGACCCCTCCTCGTGGACGCAAGCGGTACGATGATGACCCTCGCGATCGATACCGTGACAGCAGGTCTTACAGAGACCGTCGCTCCCCTGCTCCTTCTGGCTTGCTTGTTCGTAATCTTCCCCTTGATGCCAGACCTGAAGATCTTAGGGTCCCATTTGAGCGATATGGTCCACTGAAGGATGTTTATCTTCCTAAAAATTACTACACTGGTGAGCCTCGGGGCTTTGGATTTGTGAAATTTCGATATGCTGACGATGCAGCTGAAGCGAAGCAACAACTTAATCATACTGTTATTGGTGGCCGTGAAATAAGAATTGTGTTTGCTGAGGAAAATCGGAAAACTCCTCAAGAAATGCGTATGACTGCTCGCGTTAGTAATCGATATGGAGAAAGTGGTAGAAGGAGAACACCAACAAGATCCCCAAGACGCCGATATCGTTCTTACTCACGCTCTCCATCACCTGTTAGGGATGATTCAAGGGATCGCAGGCCTAGGGATGATGATTATTCTCCTGAGCGATCGAGATCTTATTCTAGGTCCCCCTCTCCTCATGGTGGGAAGGATTTCAGGAGGTCCCCAAGTCCAAGGGATAATGGTCAGAGTCCTTATGATAAGAGGGGTCATACACCTAGCAGATCAGAGAGTCTTAAGGGCAATGATCACAGTCCTTCAAGGTCTCGCTCACGGTCATTCAGTTCTCGCTGA 759 0.4941 MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRDSRSYRDRRSPAPSGLLVRNLPLDARPEDLRVPFERYGPLKDVYLPKNYYTGEPRGFGFVKFRYADDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRMTARVSNRYGESGRRRTPTRSPRRRYRSYSRSPSPVRDDSRDRRPRDDDYSPERSRSYSRSPSPHGGKDFRRSPSPRDNGQSPYDKRGHTPSRSESLKGNDHSPSRSRSRSFSSR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2108 252 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 142 - -
Glsi01g2108 252 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 46 238 - -
Glsi01g2108 252 SMART rrm1_1 51 124 IPR000504 GO:0003723
Glsi01g2108 252 MobiDBLite consensus disorder prediction 22 44 - -
Glsi01g2108 252 MobiDBLite consensus disorder prediction 1 54 - -
Glsi01g2108 252 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Glsi01g2108 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Glsi01g2108 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 122 IPR000504 GO:0003723
Glsi01g2108 252 SMART rrm2_1 51 124 IPR003954 GO:0003676
Glsi01g2108 252 MobiDBLite consensus disorder prediction 219 242 - -
Glsi01g2108 252 MobiDBLite consensus disorder prediction 1 21 - -
Glsi01g2108 252 Gene3D - 2 142 IPR012677 -
Glsi01g2108 252 SUPERFAMILY RNA-binding domain, RBD 8 126 IPR035979 GO:0003676
Glsi01g2108 252 MobiDBLite consensus disorder prediction 168 192 - -
Glsi01g2108 252 MobiDBLite consensus disorder prediction 132 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2108 Glsi-ChrGlsi01 84197755 84202681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2108 43 123 Eukaryotic Initiation Factors Gene Family AT2G36660 30.864 7.54e-07 47.8