Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2100 ATGCCTATAATTAGGAGCATATTTCAGGATATGAGATCGAGGTCGCACCGTGTGGTGCAGGACGGTTCGATGGAGGTTGTCACTGATGGATTGAAGCAGAGTTGCTGGGCCAACATGCCGCAGGAGCTGCTGAGGGAAGTGTTGCTCAGAATTGAGGAGTCCGAGAGCTCTTGGCCTCCTCGGAGGAGTGTGGTGGCGTGCGCTGGAGTGTGTCGGAGTTGGAGGGAAATCACCAAGGACATCGTCAAGACACCTGAAGTTTCTGCTAAGATTACTTTTCCGATCTCTGTCAAGCAGCCGGGCCCAAGGGAGCATCTTCTTCAGTGCTTTATAAAGCGCAACCGCTCCTCCCAAACATATCATTTGTTTCTTAGTTTAACTAATGCTTTAGCTGATGATGGGAAGTTCCTTCTGGCTGCACGCAAGTGCCGACGTCCCACCTGCACAGATTATATTATATCTCTAGACGCTGATGAAATGTCAAATGGAAGCATCACCTACGTTGGGAAACTGAGATCAAATTTTCTGGGAACAAAGTTCACAATCTATGATGGCCAGCCACCTCATGCAGGCGCAAAAATTACAAAAAGTCGCTCCACTAAGCTGGTGAATCTGAAGCAAGTTTCACCCAGGGTCCCTACTGGTAACTATCCAGTGGCCCATATTTCATATGAACTAAATGTGCTAGGTTCCAGGGGGCCTAGGAGAATGCACTGTGTCATGGATGCCATTCCTGCCTCTGCAATTGAACCAGGAGGGGTAGCCCCTACACAGACTGAGTTTTCTCTTAGCAACATTGATATGTTTCCTTCATTTCCATTTTTTCGATCAAAATCAAATCGTCTGGAAAAATCGCTATCTGGACCCCTGGGCGATCAAAAAGATGGGGTGCTAGTGTTGAAAAACAAGTCTCCCAGGTGGCATGAGCAGCTCCAATGTTGGGCCAGAACATGA 954 0.479 MPIIRSIFQDMRSRSHRVVQDGSMEVVTDGLKQSCWANMPQELLREVLLRIEESESSWPPRRSVVACAGVCRSWREITKDIVKTPEVSAKITFPISVKQPGPREHLLQCFIKRNRSSQTYHLFLSLTNALADDGKFLLAARKCRRPTCTDYIISLDADEMSNGSITYVGKLRSNFLGTKFTIYDGQPPHAGAKITKSRSTKLVNLKQVSPRVPTGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPTQTEFSLSNIDMFPSFPFFRSKSNRLEKSLSGPLGDQKDGVLVLKNKSPRWHEQLQCWART 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2100 317 Gene3D Tubby Protein; Chain A 96 316 IPR025659 -
Glsi01g2100 317 CDD F-box_AtTLP-like 36 80 - -
Glsi01g2100 317 SUPERFAMILY F-box domain 29 80 IPR036047 GO:0005515
Glsi01g2100 317 Gene3D - 29 83 - -
Glsi01g2100 317 SUPERFAMILY Tubby C-terminal domain-like 85 314 IPR025659 -
Glsi01g2100 317 PANTHER TUBBY-RELATED 18 314 - -
Glsi01g2100 317 Pfam Tub family 97 315 IPR000007 -
Glsi01g2100 317 Pfam F-box domain 36 83 IPR001810 GO:0005515
Glsi01g2100 317 PRINTS Tubby superfamily signature 151 167 IPR000007 -
Glsi01g2100 317 PRINTS Tubby superfamily signature 216 243 IPR000007 -
Glsi01g2100 317 PRINTS Tubby superfamily signature 300 317 IPR000007 -
Glsi01g2100 317 PRINTS Tubby superfamily signature 167 191 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2100 Glsi-ChrGlsi01 84140775 84143053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2100 8 314 TUB Transcription Factor Family AT2G47900 70.323 1.75e-153 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Glsi01g2100 Tub 6e-67 CL0395