Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2096 ATGGGGTGTGTCTTTGGGAGAGAGGCATCGGCGAAGTCCACTTCAGAGGCTGTGGCGGAGAGGGAGAAAGGGAGAGAAGAGAGGAAAGAGGAAGTTAAAGCTGCGAAGGCAGAAGTGAGTGAGGTTCAAAATGGTGGGAATCGGAAGGAGGGTGGAGAGGACAAGAGCTCGCGGCCTAGGGGGGAAAGGCGGCGATCGTCAAGGCCCAATCCGAGGTTGAGCAATCCACCTAACAATATACATGGTGAGCAAGTGGCTGCGGGGTGGCCCTCTTGGCTCTCCAAGGTTGCTGGGGAAGCTATAAACGGGTTGACGCCTAGAAGAGCAGACACTTTTGAGAAGCTTGACAAGATTGGGCAAGGTACATACAGTAATGTTTACAAAGCCAGAGATACTTTAACAGGTAAAATTGTTGCCTTAAAGAAGGTTCGATTTGACAATTTGGAGCCCGAGAGTGTGAAATTCATGGCCAGAGAGATTCTAATATTGCGTCGACTGGACCATCCTAATGTTGTCAAACTGGAAGGTTTAGTGACTTCTAGAATGTCTTGTAGTTTGTATCTTGTGTTTGTATACATGGAGCATGATTTGGCTGGACTTGCTACAAGCCCAGGAATTAAGTTCACTGAGCCTCAGGTTAAATGTTACATGAATCAGCTGTTTTCTGGACTGGAACATTGTCACAACCGTCATGTGCTACATCGTGATATAAAGGGGTCAAACCTTCTTATTGACAATGAAGGAGTTCTTAAAATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTAATCACAAGCATCCTATGACAAGTAGGGTGGTGACTTTATGGTATCGACCTCCAGAACTTCTTCTTGGGGCTACTGATTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATCCTTGCTGAACTGTTGGCTGGAAAGCCTATTTTACCTGGCCGAACAGAGGTGGAGCAGCTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAGTATTGGAAGAAGTCAAAGTTGCCACATGCTACCATTTTTAAACCCCAACAATCATACAAGCGGTGTATAGCAGAGTTATTTAAAGATTTTCCACAATCATCCTTGCCACTAATTGAGACCCTTCTAGCAATTGATCCAGCTGAACGTCAGACTGCCACTGCTGCATTGCAAAGTGAATTCTTTACGACAAAACCTTATGCTTGTGAGCCATCTAGCCTTCCGAAATATCCTCCCAGCAAGGAGATGGATGCAAAGCTGCGAGATGAAGAGGCTAGAAGATTGAGAGCAGTGGGTAAAACTAATGCTGATGGTGTCAAGAAATCTCGTCCTCGTGACCGGGGAGGGAGGGGAATTCCGGTTCCAGAAGCCAATGCTGAGCTTCAAGCAAATATTGATAGACGGCGACTGATAACACATGCGAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCCCACCAAGATGGAACACTAGGCTATCCTTTGGGTTCTTCACATCACATGGATCCAGCTTTTGATCCTCCTGATGTTCCATTTAGTTCTACAAACTTGTCATATCCAAAAGCAAATATCCAAACCTGGTCTGGCCCATTGGTTGAATCTGCTGGTTTGGGTGCACCAAGGAGAAAGAAGAACATGGCAGGTGATGGCCATACACAGTCAAAGTCATCAAAGAAGGACTCAAAAAGATAG 1698 0.457 MGCVFGREASAKSTSEAVAEREKGREERKEEVKAAKAEVSEVQNGGNRKEGGEDKSSRPRGERRRSSRPNPRLSNPPNNIHGEQVAAGWPSWLSKVAGEAINGLTPRRADTFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFVYMEHDLAGLATSPGIKFTEPQVKCYMNQLFSGLEHCHNRHVLHRDIKGSNLLIDNEGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPILPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIAELFKDFPQSSLPLIETLLAIDPAERQTATAALQSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAVGKTNADGVKKSRPRDRGGRGIPVPEANAELQANIDRRRLITHANAKSKSEKFPPPHQDGTLGYPLGSSHHMDPAFDPPDVPFSSTNLSYPKANIQTWSGPLVESAGLGAPRRKKNMAGDGHTQSKSSKKDSKR 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2096 565 CDD STKc_CDK9_like 112 396 - -
Glsi01g2096 565 SMART serkin_6 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2096 565 MobiDBLite consensus disorder prediction 513 532 - -
Glsi01g2096 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Glsi01g2096 565 Coils Coil 25 45 - -
Glsi01g2096 565 FunFam probable serine/threonine-protein kinase At1g54610 99 194 - -
Glsi01g2096 565 MobiDBLite consensus disorder prediction 430 565 - -
Glsi01g2096 565 MobiDBLite consensus disorder prediction 546 565 - -
Glsi01g2096 565 ProSiteProfiles Protein kinase domain profile. 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2096 565 FunFam probable serine/threonine-protein kinase At1g54610 195 436 - -
Glsi01g2096 565 MobiDBLite consensus disorder prediction 1 84 - -
Glsi01g2096 565 MobiDBLite consensus disorder prediction 47 69 - -
Glsi01g2096 565 Pfam Protein kinase domain 112 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2096 565 Gene3D Phosphorylase Kinase; domain 1 100 194 - -
Glsi01g2096 565 Gene3D Transferase(Phosphotransferase) domain 1 195 435 - -
Glsi01g2096 565 MobiDBLite consensus disorder prediction 14 37 - -
Glsi01g2096 565 MobiDBLite consensus disorder prediction 463 485 - -
Glsi01g2096 565 SUPERFAMILY Protein kinase-like (PK-like) 107 401 IPR011009 -
Glsi01g2096 565 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Glsi01g2096 565 PANTHER CELL DIVISION PROTEIN KINASE 110 400 - -
Glsi01g2096 565 MobiDBLite consensus disorder prediction 430 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2096 Glsi-ChrGlsi01 84125655 84130318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2096 107 428 Core Cell Cycle Gene Families AT5G10270 52.959 1.85e-119 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Glsi01g2096 Pkinase 7.9e-68 CL0016