Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2092 ATGCCACCACTCTCTCAATGTCGAGCTTCTCATAATGAACTTGTAGCTATTGCTGAAACGGGTAGCACCTCCAGAAAGCGAAGTAGACAGAAGTGTGCTGCCAAGTTAGAGAGGACCGAGAGCCTTCGGATGGAACGTGACCGAAGGTCGAAGATGACTCACATGTTCGCTGAGCTTCAGTCCGCCGTCCCGGGTCTTCTTTCCAAGGCTACAAGGGAAGCGATTATCGACCAAACAATTAACTACATTAAGGAACTTGAAAAGAAGAAGAAAAGTTTGGAAGAGCTCAAGGACTCAATGGAAGCAGTAGCAGTAGAAGGGAGGTTGATGCTTCCGTGTACAAGCAGGAATTCCTCCATCGATGTTATAGTTTCTGGGAATGTTGCCTTCTTTGGGATTCAATCAGAAGCTCAATCGGGATTAATCACTGTAATATTCAAGGTGTTCTACAAGAACCATGCTGAGATTTTGGCTGCAAATGTTTCAGTGAACAGTGGGCAATTGACACTAGCAATCACGGCTCTAGTTCATAATGGCGATGGAAACAGCACTGCTGAGAAAATTAAGACAGAGATTCTAAGTTTGTAG 588 0.4473 MPPLSQCRASHNELVAIAETGSTSRKRSRQKCAAKLERTESLRMERDRRSKMTHMFAELQSAVPGLLSKATREAIIDQTINYIKELEKKKKSLEELKDSMEAVAVEGRLMLPCTSRNSSIDVIVSGNVAFFGIQSEAQSGLITVIFKVFYKNHAEILAANVSVNSGQLTLAITALVHNGDGNSTAEKIKTEILSL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2092 195 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 86 IPR011598 GO:0046983
Glsi01g2092 195 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 19 179 IPR044278 GO:0003700|GO:0006355|GO:0009960
Glsi01g2092 195 SMART finulus 42 92 IPR011598 GO:0046983
Glsi01g2092 195 Pfam Helix-loop-helix DNA-binding domain 43 87 IPR011598 GO:0046983
Glsi01g2092 195 CDD bHLH_SF 45 83 - -
Glsi01g2092 195 Gene3D - 35 109 IPR036638 GO:0046983
Glsi01g2092 195 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 113 IPR036638 GO:0046983
Glsi01g2092 195 Coils Coil 76 106 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2092 13 163 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 28.289 1.64e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi01g2092 HLH 1.5e-07 No_clan