Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2091 ATGGATCATAAAGCAGGTGAAATTGACCAGGACTCGAAGGAGTTTGTGTACATAGTAAACAGCCAACAAACTTTGTATATTCTCATCATTGTATATATGCCATTTATTCTTGAATCCTATATATCATTCTGTGCACAGTTTCGCTTAATCGAGACAATCCAAACCAACAAATCTTTCCAAATCAAGAAACTCCTCCTGTTGCCTTCCTCTCTCTTGCGAGAGAGAAAAGGAGAGCCTTCTGTAAATCCCTCTCCTCCAAAACTCATGGAAGGCTCGGCCAATGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAGCATTACAGGAGACGATGCCAGATTCGAGCTCCCTGCTGCAATGAGATCTACCCCTGCCGTCATTGTCATAACGAGGCCACGAGCATGATGAGCAATATCTTTGATCGGCACGAACTCGAACGCCAAGATGTTAAAGAAGTTATTTGTTCAGTTTGTGACACAGAGCAGCCGGTTGCTCAAATTTGCACAAACTGTGGCGTCAGAATGGGAGAATATTTCTGCAACATCTGCAAATTCTTCGATGATGATAAAGGGAAACAGCAGTTTCATTGTGATGATTGTGGGATCTGCAGAGTCGATGGTCGCCAAAATTATTTCCACTGCAAGAAGTGCGGGTCTTGCTATTCAGTTGCTCTGCGGGATAATCACTTATGTGTGGAGAACTCCATGAGGCATCACTGTCCCATATGCTATGAGTACCTCTTTGACTCATTGAAAGACACCACTGTTATGAAATGTGGTCATACAATGCATCGTGAATGTTGCCAAGAGATGATAAAACGTGACAAGTTTTGTTGTCCCATATGCTCCAAGTCGGTGATTGACATGTCCAGGACGTGGAAGAGAATTGATGAAGAGATTGAAGCAACTCTCATGCCTGAAGATTATCGGCACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACTGAAGTTTACTTCCACATTATTGGGCAAAAATGCGGCCACTGCAGATCATATAATACTCGTGCAATTGCTCCTCCTGTTCTTCCTCAATGA 1068 0.4307 MDHKAGEIDQDSKEFVYIVNSQQTLYILIIVYMPFILESYISFCAQFRLIETIQTNKSFQIKKLLLLPSSLLRERKGEPSVNPSPPKLMEGSANERLDFGKMGYGCKHYRRRCQIRAPCCNEIYPCRHCHNEATSMMSNIFDRHELERQDVKEVICSVCDTEQPVAQICTNCGVRMGEYFCNICKFFDDDKGKQQFHCDDCGICRVDGRQNYFHCKKCGSCYSVALRDNHLCVENSMRHHCPICYEYLFDSLKDTTVMKCGHTMHRECCQEMIKRDKFCCPICSKSVIDMSRTWKRIDEEIEATLMPEDYRHRKVWILCNDCNDTTEVYFHIIGQKCGHCRSYNTRAIAPPVLPQ 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2091 355 SUPERFAMILY CHY zinc finger-like 103 175 IPR037274 GO:0008270
Glsi01g2091 355 ProSiteProfiles Zinc finger RING-type profile. 241 284 IPR001841 -
Glsi01g2091 355 Pfam RING-type zinc-finger 241 281 IPR027370 -
Glsi01g2091 355 SMART ring_2 241 283 IPR001841 -
Glsi01g2091 355 SUPERFAMILY RING/U-box 240 290 - -
Glsi01g2091 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 314 IPR013083 -
Glsi01g2091 355 ProSiteProfiles Zinc finger CTCHY-type profile. 176 240 IPR017921 -
Glsi01g2091 355 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 92 351 - -
Glsi01g2091 355 SUPERFAMILY Zinc hairpin stack 177 234 IPR037275 -
Glsi01g2091 355 ProSiteProfiles Zinc finger CHY-type profile. 99 174 IPR008913 GO:0008270
Glsi01g2091 355 Pfam CHY zinc finger 106 186 IPR008913 GO:0008270
Glsi01g2091 355 Gene3D - 315 350 - -
Glsi01g2091 355 FunFam RING finger and CHY zinc finger domain-containing protein 1 312 354 - -
Glsi01g2091 355 Pfam Zinc-ribbon 288 346 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2091 Glsi-ChrGlsi01 84094349 84099036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2091 86 354 C2H2 Transcription Factor Family AT3G18290 38.163 2.89e-55 193