Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2088 ATGGCGAGGCCCTCGAAGCACCAGGTGTCTTCCGACGAAGCCATGTCCAACGGCTCCAATTCCTCTGAGGATGAGCATATCAATGAGCAGATCAACGACGAAGAGGACGAAGAGGAGCTGGAAGCGGTGGCTCGTTCCGCTAGCTCCGACGACGATGAAGCCGCTGACGACGATTCGCCAGATTCTGATGACGATGCGGCCGCCACCGCTGATGTCGACGAGGAGGAACAGGATGGAGGTAATTTTGATGCTGAAATTAGCAAGCGTGAGAAGGCCAGATTAAAAGAAATGCAGAAACTGAAGAAACAAAAGATTCAGGAGATATTGGATGAGCAAAATGCTGCCATTGATGCTGATATGAATAATAGAGGAAAGGGGCGCTTGAAGTATCTCCTACAGCAAACTGAGTTGTTTGCACATTTTGCAAAAGGTGATCCAACCTCATCTCAGAAGAAGTCAAAGGGAAGGGGTCGCCATGCATCAAAAGTTACCGAAGAAGAGGAAGACGAAGAATACCTTAAAGAAGAAGAAGATGGTTTGGCTGGAAATACACGTCTAGTAACACAACCATCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAATTGGCTTATAAGATTGTATGAGAATGGTATCAATGGAATTTTGGCAGATGAAATGGGGCTTGGTAAAACATTGCAAACTATCTCCTTATTGGGTTATTTGCATGAGTTCAGAGGAATCAAAGGCCCCCATATGGTGGTTGCTCCAAAATCTACTCTCGGAAATTGGATGAATGAGATTCGACGCTTTTGTCCTATTTTGCGTGCAGTAAAATTTCTTGGCAATCCTGATGAAAGGAGACACATTAGAGAGGAATTATTGGTTGCTGGGAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGCGATCAAGGAGAAGTCTGCGTTGCGTCGTTTTAGTTGGCGCTACATAATTATTGATGAAGCCCATCGAATCAAGAATGAGAATTCTTTACTTTCCAAAACAATGAGGTTATACAATACAAACTATCGCCTTCTAATCACTGGGACACCACTTCAGAACAATCTTCATGAGCTTTGGTCTCTTCTTAACTTTCTTCTTCCAGAAATTTTTAGTTCTGCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGTGATAATGACCAGCAAGAGGTCGTTCAACAACTGCACAAGGTCCTCCGCCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAGGGTTTACCACCAAAGAAGGAAACCATTCTCAAAGTAGGTATGTCACAAATGCAGAAACAGTATTATAGGGCATTATTACAGAAGGATCTTGAGGTTGTCAATGCTGGTGGTGAACGGAAACGCCTCCTGAATATAGCAATGCAGCTGCGTAAATGTTGTAATCACCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTATACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTAAAAGAGCGTGACTCTAGGGTGCTTATATTTTCACAGATGACCAGGTTGTTAGACATTCTTGAAGATTATTTGATGTTTCGTGGATATCAGTATTGTCGTATTGATGGTAATACTGGTGGAGAAGACCGTGATGCTTCCATTGAAGTTTTCAATAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGGGCTGGAGGTCTTGGCATTAACCTTGCTACTGCTGATGTTGTTATTCTATACGACAGTGATTGGAACCCACAAGTTGACTTGCAGGCTCAGGACCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGCACTGAGTATACCATTGAGGAAAAAGTCATTGAAAGGGCCTACAAAAAACTTGCACTTGATGCACTGGTCATTCAGCAAGGACGATTGGCTGAACAGAAGACTGTAAATAAAGATGAATTGCTTCAAATGGTCAGATTTGGAGCTGAAATGGTTTTCAGTTCAAAGGATAGTACAATTACAGATGAGGATATTGACAGAATTATTGCTAAAGGAGAAGAAGCAACGGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAATTTAAGATGGATGACTCTGCTGAGTTGTATGATTTTGATGACGAGAAGGATGAGAACAAATTGGATTTCAAAAAAATTGTAAGTGAAAACTGGATAGAGCCACCGAAAAGAGAGCGGAAGCGCAATTACTCAGAGTCTGAATATTTTAAGCAAACAATGCGCCAAGGTGGTCCTACTAAACCCAAAGAGCCCCGAATTCCTAGGATGCCTCAGCTGCATGATTTCCAGTTCTTCAACACACAAAGGTTGAGCGAGCTGTATGAAAAGGAAGTACGCTATCTCATGCAAACACATCAGAAGAATCAATTAAAGGACTCAATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCTTTGACAGCTGAAGAGCTGGAAGAAAAGGAACGCCTGCTAGAGGAGGGATTTTCATCATGGAGCCGAAGGGATTTTAACACTTTCATTAGGGCCTGTGAAAAGTATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGTAAAACAGAGGAGGAAGTTGAAAGATATTCTAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGACAGAATTATTAAAAACATCGAAAGAGGGGAGGCTAGAATATCTCGGAAGGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCATGGCTAGAGTTGAAGATACAATATGGGCAAAACAAAGGGAAGTTATACAATGAAGAGTGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAATTGGGATGAGTTGAAGGCGGCATTTCGTACATCTCCCTTATTTCGGTTTGATTGGTTTGTTAAGTCTCGCACAACACAGGAACTTGCAAGGAGGTGTGACACTCTCATTCGGTTGATAGAGAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCTAAGAGCATGACCCCATCAAAGCGTGCCTTGGCAAGACAGACAGACAGTCCTTCTTTGAAGAAGCGTAAGCAATTAACTATGGATGACTATGTTAGCTCGGGAAAGAGGAAAAAATAA 3216 0.416 MARPSKHQVSSDEAMSNGSNSSEDEHINEQINDEEDEEELEAVARSASSDDDEAADDDSPDSDDDAAATADVDEEEQDGGNFDAEISKREKARLKEMQKLKKQKIQEILDEQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDPTSSQKKSKGRGRHASKVTEEEEDEEYLKEEEDGLAGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPDERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGDNDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIEVFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDSAELYDFDDEKDENKLDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYSKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLIEKENQEYDERERQARKEKKLAKSMTPSKRALARQTDSPSLKKRKQLTMDDYVSSGKRKK 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2088 1071 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 502 653 IPR001650 -
Glsi01g2088 1071 Pfam HAND 761 843 IPR015194 GO:0003677|GO:0006338|GO:0031491
Glsi01g2088 1071 FunFam ISWI chromatin-remodeling complex ATPase CHR11 936 1039 - -
Glsi01g2088 1071 Coils Coil 998 1032 - -
Glsi01g2088 1071 Gene3D iswi atpase 903 935 - -
Glsi01g2088 1071 SUPERFAMILY Homeodomain-like 851 901 IPR009057 -
Glsi01g2088 1071 MobiDBLite consensus disorder prediction 51 80 - -
Glsi01g2088 1071 CDD SF2_C_SNF 498 623 - -
Glsi01g2088 1071 Gene3D - 936 1039 - -
Glsi01g2088 1071 Coils Coil 87 114 - -
Glsi01g2088 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 695 IPR027417 -
Glsi01g2088 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 412 IPR027417 -
Glsi01g2088 1071 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 95 1056 - -
Glsi01g2088 1071 Pfam Helicase conserved C-terminal domain 500 612 IPR001650 -
Glsi01g2088 1071 Pfam SLIDE 905 1015 IPR015195 GO:0003677|GO:0005634|GO:0006338
Glsi01g2088 1071 SUPERFAMILY Homeodomain-like 903 1025 IPR009057 -
Glsi01g2088 1071 Gene3D ISWI, HAND domain 749 847 IPR036306 GO:0003677|GO:0006338|GO:0031491
Glsi01g2088 1071 ProSiteProfiles SANT domain profile. 847 899 IPR017884 -
Glsi01g2088 1071 Gene3D - 198 413 IPR038718 -
Glsi01g2088 1071 SMART ultradead3 193 385 IPR014001 -
Glsi01g2088 1071 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 760 850 IPR036306 GO:0003677|GO:0006338|GO:0031491
Glsi01g2088 1071 MobiDBLite consensus disorder prediction 1047 1071 - -
Glsi01g2088 1071 CDD SANT 851 890 IPR001005 -
Glsi01g2088 1071 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 209 374 IPR014001 -
Glsi01g2088 1071 MobiDBLite consensus disorder prediction 142 178 - -
Glsi01g2088 1071 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 848 902 - -
Glsi01g2088 1071 MobiDBLite consensus disorder prediction 9 25 - -
Glsi01g2088 1071 FunFam ISWI chromatin-remodeling complex ATPase CHR11 749 847 - -
Glsi01g2088 1071 FunFam ISWI chromatin-remodeling complex ATPase CHR11 418 710 - -
Glsi01g2088 1071 FunFam Chromatin-remodeling complex ATPase 198 413 - -
Glsi01g2088 1071 SMART helicmild6 528 612 IPR001650 -
Glsi01g2088 1071 SMART sant 950 1011 IPR001005 -
Glsi01g2088 1071 SMART sant 848 897 IPR001005 -
Glsi01g2088 1071 Gene3D - 418 710 IPR027417 -
Glsi01g2088 1071 Gene3D - 848 902 - -
Glsi01g2088 1071 MobiDBLite consensus disorder prediction 1020 1036 - -
Glsi01g2088 1071 MobiDBLite consensus disorder prediction 750 778 - -
Glsi01g2088 1071 CDD DEXHc_SMARCA1_SMARCA5 194 414 IPR044754 GO:0005524
Glsi01g2088 1071 MobiDBLite consensus disorder prediction 1020 1071 - -
Glsi01g2088 1071 MobiDBLite consensus disorder prediction 1 89 - -
Glsi01g2088 1071 Pfam SNF2-related domain 210 477 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2088 Glsi-ChrGlsi01 84075668 84084197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2088 218 639 RAD5 or RAD16-like Gene Family AT1G02670 27.129 1.11e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi01g2088 SNF2_N 2.9e-71 CL0023