Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2087 ATGGGTGGGTGTTTTCCTTGCTTTGGATCATCCAACAAGGAGGACAGTGGGGTGAAGGAAGTTGTCAAGAAGGATTCATTTAAAGAAGGTTCAATTGCTCAGTCTTACCAAATCAACAGGGTTACCTCAGATAAATCAAAATCGAGGAGTGGTTCTGATCCTAAGAAGGAACCACCAGTTCCAAAGGATGGACCTACCGCCCACATTGCTGCACAAACATTTACATTCCGAGAGCTTGCAGCTGCCACAAAGAATTTTAGGCCAGAATGTTTATTAGGCGAAGGAGGTTTTGGACGTGTTTACAAAGGTCGTCTCGAGAGCACAGGACAAGTAGTTGCTGTAAAACAGCTTGACCGCAATGGCCTTCAAGGAAATCGAGAATTTTTGGTGGAGGTTCTCATGCTCAGCCTCTTGCATCACCCAAATCTTGTGAACTTAATTGGTTATTGTGCTGATGGTGATCAGCGGCTGCTTGTTTATGAATTTATGCCATTGGGCTCTTTGGAGGATCATTTACATGATCTTCCTCCCGACAAGGAGCCTCTGGACTGGAACACAAGGATGAAAATAGCAGCTGGTGCTGCTAAGGGATTGGAATATTTACATGACAAAGCAAATCCCCCTGTAATATATAGAGACTTGAAGTCATCCAACATCCTCCTAGATGAGGGTTATCATCCCAAGTTATCAGATTTTGGGCTTGCAAAACTCGGCCCTGTTGGTGATAAGACTCATGTATCCACACGAGTAATGGGAACATATGGTTATTGTGCTCCAGAATATGCTATGACAGGCCAACTAACTCTGAAGTCTGACGTATACAGTTTTGGAGTTGTCTTCCTCGAACTTATTACTGGGCGAAAGGCTATTGATAATACACGTGCACATGGAGAGCATAATCTCGTTGCCTGGGCACGACCTCTTTTTAAAGACCGTAGGAAGTTCCCCAAAATGGCTGATCCCCTACTTCAAGGCCGTTATCCGATGCGAGGACTGTACCAAGCACTTGCAGTTGCAGCTATGTGTTTGCAGGAACAAGCTGCTACAAGGCCTCTTATTGGGGATGTTGTGACTGCTCTCACATACCTGGCCTCTCAGACATATGATCCAAGTGCAGCCAGTCAGACTAACAGAGTTGGTTCATCAACCCCTAGGAACAGGGATGACCGAAGGAGCATGGCAGATGGCGTGGATAGCCCAGATCGTGGACGGAGTGGCTCCCCTTCCACTCACAAGAACTCACCTGATTTCAGGAGAAGAGATGGTAGGGATCCAAGTGCTGGTACAGACTTGGGCAGGAGTGAAACTGGGTCTGGGAGAAAATGGGGATTGGATGATGTAGAAAGGCAGGAATCTCAGAGGGACAGCCCTGTAAATACTGGAAGAGCTAGGGAAACTCCAAGGAACCGTGACCTGGACAGAGAACGTGCAGTTGCTGAAGCAAAAGTATGGGGTGAGAATTGGAGAGAGAAAAAGAGGGCAAATGTAATGGGTAGCTTTGATGCTACTAATGAGTGA 1518 0.4644 MGGCFPCFGSSNKEDSGVKEVVKKDSFKEGSIAQSYQINRVTSDKSKSRSGSDPKKEPPVPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPSAASQTNRVGSSTPRNRDDRRSMADGVDSPDRGRSGSPSTHKNSPDFRRRDGRDPSAGTDLGRSETGSGRKWGLDDVERQESQRDSPVNTGRARETPRNRDLDRERAVAEAKVWGENWREKKRANVMGSFDATNE 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2087 505 Gene3D Phosphorylase Kinase; domain 1 61 162 - -
Glsi01g2087 505 MobiDBLite consensus disorder prediction 413 428 - -
Glsi01g2087 505 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Glsi01g2087 505 MobiDBLite consensus disorder prediction 369 476 - -
Glsi01g2087 505 FunFam Serine/threonine-protein kinase PBS1 163 378 - -
Glsi01g2087 505 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2087 505 PANTHER OS07G0668900 PROTEIN 4 372 - -
Glsi01g2087 505 Gene3D Transferase(Phosphotransferase) domain 1 163 382 - -
Glsi01g2087 505 Pfam Protein kinase domain 91 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2087 505 MobiDBLite consensus disorder prediction 439 455 - -
Glsi01g2087 505 MobiDBLite consensus disorder prediction 38 67 - -
Glsi01g2087 505 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2087 505 MobiDBLite consensus disorder prediction 46 62 - -
Glsi01g2087 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Glsi01g2087 505 FunFam Serine/threonine-protein kinase PBS1 59 162 - -
Glsi01g2087 505 CDD STKc_IRAK 92 361 - -
Glsi01g2087 505 MobiDBLite consensus disorder prediction 383 398 - -
Glsi01g2087 505 SUPERFAMILY Protein kinase-like (PK-like) 68 360 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2087 Glsi-ChrGlsi01 84067254 84073652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2087 4 427 Glycoside Hydrolase AT3G07070 59.535 3.86e-170 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Glsi01g2087 Pkinase 5.7e-46 CL0016