Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2078 ATGTCCTTCCTGAAGGGTTTTGGAAGAACCTCACCGATTCCCAGGCTCTATAATCTTCTTCAACATGGTTCATTACCATTCGCCCACAAGTACAGCACAGCCGTCCGCACTCCAGAGAAACAATCTTTTACAGAGAACTACCTCATCAGCAATTGTGGGTTCTCCGCAGAAACCGCTTTGACGATTTCCCAGCGCGTCCTTTTCAAGGACTCGGAGAACCCTGAGTCAGTTCTCACCCTCTTCAGAAGCTGTGGTTTTTCGGACTCTCAGCTGCGCGAGATCATCAGAAAGTCACCGCGGCTGCTTCAAAGTGATCCTTTAGAGACCATTTGGCCCAAGCTTGACTTTTTGCTATCAAAAGGTGCGTCCTGCTCCCAACTTATCAACATCGTAACCATAAGCCCCGTATTCTTATTGAGAAGCTTAGAGAATCATATAATGCCTTCTTATAATTTTGTAAAACGATTCGTTGGTTCTGATCAGAGGGCCATTACATCAATAAGTCGATGTCTTGGGATCATTGGTAGTGATTTCTTGGAGTTGCAAACTAATATCAGATTCTTGCTTGACATTGGGGTGCCTAATTCTGGCATTGCTAGATTACTTTATACATGGCCAAGCTTACTTATCATGGATGTAGATAAGTTTAAAGTGGCAGTTGAGGAAGTAAAGAATTTGGGTATTGATCCTTCAAAATCAGTTTTCCTTCCTGCATTGTACGCCACAAATAAGTTAAGCAAATCCATTTGGAAAAGTAAGGTTGATTTGTACAAGAAGTGGGGCTGGTCTGATGAAGAGATCAATAAAGCCTTTGCACTGCATCCAAACTGTATGCTAAAATCTCTATGTAAGATTACGGCAGTGATGGAATTTTTTGTCAAGGACATGGGCTGGGAATCTGCTGTGCTTGCCAATAATCCGATATTTTTTTCATTGAGTTTGGAGAAAAGAATCATTCCGAGGGCTTCTGTCTTGCAATATCTTCATTCAAGAGGTTCAATTAAGAATGCCTGCATCGCGTACCCATATTACATGTCTGAAGAAATGTTCCTTCAGAAATTTGTGATTCGTTTTGAGGATGAAGCTCCTCAGTCGTTGAAGTTGTATGAAGAGAAAATGAATCTTTCAAGATAA 1134 0.4145 MSFLKGFGRTSPIPRLYNLLQHGSLPFAHKYSTAVRTPEKQSFTENYLISNCGFSAETALTISQRVLFKDSENPESVLTLFRSCGFSDSQLREIIRKSPRLLQSDPLETIWPKLDFLLSKGASCSQLINIVTISPVFLLRSLENHIMPSYNFVKRFVGSDQRAITSISRCLGIIGSDFLELQTNIRFLLDIGVPNSGIARLLYTWPSLLIMDVDKFKVAVEEVKNLGIDPSKSVFLPALYATNKLSKSIWKSKVDLYKKWGWSDEEINKAFALHPNCMLKSLCKITAVMEFFVKDMGWESAVLANNPIFFSLSLEKRIIPRASVLQYLHSRGSIKNACIAYPYYMSEEMFLQKFVIRFEDEAPQSLKLYEEKMNLSR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2078 377 SMART mt_12 128 159 IPR003690 GO:0003690|GO:0006355
Glsi01g2078 377 SMART mt_12 161 194 IPR003690 GO:0003690|GO:0006355
Glsi01g2078 377 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Glsi01g2078 377 SMART mt_12 199 229 IPR003690 GO:0003690|GO:0006355
Glsi01g2078 377 SMART mt_12 92 123 IPR003690 GO:0003690|GO:0006355
Glsi01g2078 377 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Glsi01g2078 377 Pfam mTERF 181 350 IPR003690 GO:0003690|GO:0006355
Glsi01g2078 377 Pfam mTERF 78 229 IPR003690 GO:0003690|GO:0006355
Glsi01g2078 377 Gene3D Transcription termination factor 3, mitochondrial 158 361 IPR038538 -
Glsi01g2078 377 PANTHER CGI-12 PROTEIN-RELATED 40 357 IPR003690 GO:0003690|GO:0006355
Glsi01g2078 377 FunFam Mitochondrial transcription termination factor-like 142 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2078 Glsi-ChrGlsi01 83955791 83956924 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Glsi01g2078 mTERF 6.9e-19 No_clan