LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi01g2074	ATGTCCACCTCTAGAACCTTAGATTCTTCATCCTTCAAAGGGTTTGAACCCAATCAGACCCAAATGGTTTTGTCTCTTCTTCAACGTAACACATCATCTTCTTCTGGAGAGAGAAGAGGTCGAAGAAAGCAAGCAGAACCAGGGAGGTTTCTTGGGGTGAGAAGACGCCCTTGGGGTAGATATGCTGCTGAAATTAGGGACCCTACTACTAAAGAAAGGCATTGGCTTGGCACTTTTGACACTGCTCAAGAAGCTGCTCTTGCTTATGACAGAGCTGCTTTGTCCATGAAAGGAAGCCAAGCAAGAACCAACTTTATATACTCTGACAATACCACTTTCCACAATCTTCTTACTCCTGTGGATGCTCAAACTCTCTTCCCAGCTTCCCATTTCATCTGTAACCCTCAGGGCAAAGAATCAACCTATCAAAATAGTATTGTGTCTCAGCTTGATGCTTCTTCTTCCCACATTGAGAACTCCGCTAATGGCATGTCATCTGCTGCATATGGGTCATCACCTCAGGATGACAATTTCTTCTTCTCCAACGATTCTTCTAACTCAGGCTACTTGGAATGCATAGTTCCTGATAACTGTTTCAGACCTGCTTCCAGTGCCAACAGTTCATCAAACTCCAGCAAAAACAACGACCAAAAGGTTAGCTTTAGCTCTATTAATACAACCTACATGGAGGGCCAATCACATTTTGACAAGAATGCATTCTCACAAGAAGCCATGAACATGCCAACATTGGCCTCTGACTCTGCATATTTTTCTTACCCAAATGAACTTAGTCAAGGATTCTGGGATAATCATCAGCAATCATGGGATTGGAGTAATTCCACTGAACTTTCAGCTATATTTAACAACAATCCATTAGGTGCTGAAGATGGGTGCATGGGGGGTTTGTTTCCCATCACTGACAGTTCAACTTCAAGCTATGGGTTAATGACTCAATCTGCTTCTTCTACTACCTGTTCTCCATCGCTTCCTCCCTTTGGAGATGTTGACGTGGGATACTCACTCTTCTGA	1029	0.4325	MSTSRTLDSSSFKGFEPNQTQMVLSLLQRNTSSSSGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFIYSDNTTFHNLLTPVDAQTLFPASHFICNPQGKESTYQNSIVSQLDASSSHIENSANGMSSAAYGSSPQDDNFFFSNDSSNSGYLECIVPDNCFRPASSANSSSNSSKNNDQKVSFSSINTTYMEGQSHFDKNAFSQEAMNMPTLASDSAYFSYPNELSQGFWDNHQQSWDWSNSTELSAIFNNNPLGAEDGCMGGLFPITDSSTSSYGLMTQSASSTTCSPSLPPFGDVDVGYSLF	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi01g2074	342	SMART	rav1_2	49	112	IPR001471	GO:0003700\|GO:0006355
	Glsi01g2074	342	PRINTS	Ethylene responsive element binding protein signature	72	88	IPR001471	GO:0003700\|GO:0006355
	Glsi01g2074	342	PRINTS	Ethylene responsive element binding protein signature	50	61	IPR001471	GO:0003700\|GO:0006355
	Glsi01g2074	342	SUPERFAMILY	DNA-binding domain	50	107	IPR016177	GO:0003677
	Glsi01g2074	342	Pfam	AP2 domain	52	98	IPR001471	GO:0003700\|GO:0006355
	Glsi01g2074	342	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	35	215	-	-
	Glsi01g2074	342	MobiDBLite	consensus disorder prediction	35	49	-	-
	Glsi01g2074	342	CDD	AP2	49	105	IPR001471	GO:0003700\|GO:0006355
	Glsi01g2074	342	Gene3D	AP2/ERF domain	49	107	IPR036955	GO:0003700\|GO:0006355
	Glsi01g2074	342	ProSiteProfiles	AP2/ERF domain profile.	49	106	IPR001471	GO:0003700\|GO:0006355
	Glsi01g2074	342	MobiDBLite	consensus disorder prediction	27	49	-	-
	Glsi01g2074	342	FunFam	Ethylene-responsive transcription factor 2	49	107	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi01g2074	Glsi-ChrGlsi01	83891339	83892367	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi01g2074	1	212	AP2-EREBP Transcription Factor Family	AT5G18560	48.077	3.01e-64	205

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi01g2074		AP2	1.4e-12	CL0081