Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2073 ATGGAGCGGTACGGCCGGGCCAGTGAAGGGTCGCAGTCTGATCCGTCACCGGAATGGACCGGAACGGGAGGCGAAGCAGTGCTTGAAGAGTCTACGTGGCAATTGGGATTGGGTGGTGGGGAATCGTATCCGCAACGGCCCGATGAGGCTGATTGTATCTACTATTTGAAGACTGGTTTTTGTGGTTATGGCTCGCGGTGTCGGTTCAATCATCCCCGTGACCGTGGCGCGATTATTGGAGCCGCGAGGACTGGAGGGGAATATCCAGAACGAGTAGACCAACCTGTTTGCCAGTATTATATGAAGACAGGATCATGCAAGTTTGGTGCGTCCTGTAAGTACCACCATCCCAGGCAGGGAGCTTATCCTCATGTGCCAGTAAATTATTATGGATATCCATTGCGACCGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAATTTGGCAGAACTTGTAAATTCCATCATCCCCAGCCTGCTGGCGTTCAAATTCCAGCACAATCACCAGTTCCCCCAGTATCACCTCTACCAGTACCAGTACCTTCACCATTATATCCAACTGCACAGCCTCCATCTGGTCCTTCATCGCCACAATATGGTGTAATGGTTGCAAGGCCACCTCTGCTGCCTGGCTCATTAGTCCACAGCCCATACGGGCATCTGGTTTTGTCCCCTGCCATGGTCCCTTTTTCAGGTTGGAGTCATTATCAGCCTCCTGCAAGCCCTTTGGTTCCTTCGAGTACTCCATCTAATGTTGGTGTGGCACACCTTTATGGGATAAGCCAGCTACCTTCATCAGCACCCACCTATACTGGACCTTATCAACCTTTGGGTTCCTCAGTTGGTCCTTCAGGCAGTGGTCAGAAGGAGCACTCATTTCCAGAAAGACCTGGTCAACCAGAATGTCAGTATTATTTGAAAACGGGGGAGTGTAAATTTGGCCCATCATGTAGATATCATCATCCACCTGAATTAGTTGCACCAAAAATTAATGTGGTCCTTAGTCCTGTGGGCCTTCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATGCACAGCGTGGAGTATGTAAGTTTGGTCCGGCATGCAAATTTGATCATCCTATGGGAGCACTGAGTTACAGTCCATCTGCTTCTTCCCTGGCTGATATGCCAGTTGCACCGTATCCTGTGGGTTCATCAATTGGCACTCTTGCCCCATCATCTTCATCATCAGAGTTGCGGCCTGAACTTACCTCGGGATCCAGCAAGGAGTCTGCTTCATCCAGAATGTCTTCATCAATGAGCATTACAAGTGGATCAGTTGGCTTGACCTTGTCATCTGGTGGATCCATATCTCAATCAAGTGCTCAACCATCTGCTCAAAGTTCCAGTCCTTTGGTGATTAGCAATAGCACCACGAGCAGCACTGTCTCTTATACCTCAAGCTAA 1443 0.4955 MERYGRASEGSQSDPSPEWTGTGGEAVLEESTWQLGLGGGESYPQRPDEADCIYYLKTGFCGYGSRCRFNHPRDRGAIIGAARTGGEYPERVDQPVCQYYMKTGSCKFGASCKYHHPRQGAYPHVPVNYYGYPLRPGEKECSYYVKTGQCKFGRTCKFHHPQPAGVQIPAQSPVPPVSPLPVPVPSPLYPTAQPPSGPSSPQYGVMVARPPLLPGSLVHSPYGHLVLSPAMVPFSGWSHYQPPASPLVPSSTPSNVGVAHLYGISQLPSSAPTYTGPYQPLGSSVGPSGSGQKEHSFPERPGQPECQYYLKTGECKFGPSCRYHHPPELVAPKINVVLSPVGLPLRPGAPPCTHYAQRGVCKFGPACKFDHPMGALSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELTSGSSKESASSRMSSSMSITSGSVGLTLSSGGSISQSSAQPSAQSSSPLVISNSTTSSTVSYTSS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2073 480 SUPERFAMILY CCCH zinc finger 350 376 IPR036855 GO:0046872
Glsi01g2073 480 MobiDBLite consensus disorder prediction 273 291 - -
Glsi01g2073 480 SUPERFAMILY CCCH zinc finger 137 163 IPR036855 GO:0046872
Glsi01g2073 480 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Glsi01g2073 480 Gene3D - 289 375 - -
Glsi01g2073 480 FunFam CCCH type zinc finger protein 298 383 - -
Glsi01g2073 480 SMART c3hfinal6 135 162 IPR000571 GO:0046872
Glsi01g2073 480 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Glsi01g2073 480 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Glsi01g2073 480 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Glsi01g2073 480 SMART c3hfinal6 346 373 IPR000571 GO:0046872
Glsi01g2073 480 PANTHER PROTEIN PHOSPHATASE RELATED 36 409 - -
Glsi01g2073 480 Gene3D - 44 122 - -
Glsi01g2073 480 SUPERFAMILY CCCH zinc finger 304 328 IPR036855 GO:0046872
Glsi01g2073 480 SUPERFAMILY CCCH zinc finger 92 119 IPR036855 GO:0046872
Glsi01g2073 480 ProSiteProfiles Zinc finger C3H1-type profile. 135 163 IPR000571 GO:0046872
Glsi01g2073 480 MobiDBLite consensus disorder prediction 273 300 - -
Glsi01g2073 480 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Glsi01g2073 480 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Glsi01g2073 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 349 373 IPR000571 GO:0046872
Glsi01g2073 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Glsi01g2073 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Glsi01g2073 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 162 IPR000571 GO:0046872
Glsi01g2073 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872
Glsi01g2073 480 MobiDBLite consensus disorder prediction 1 25 - -
Glsi01g2073 480 Gene3D - 123 169 - -
Glsi01g2073 480 ProSiteProfiles Zinc finger C3H1-type profile. 346 374 IPR000571 GO:0046872
Glsi01g2073 480 MobiDBLite consensus disorder prediction 402 480 - -
Glsi01g2073 480 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2073 Glsi-ChrGlsi01 83883262 83889078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2073 1 442 C2H2 Transcription Factor Family AT5G18550 56.332 9.63e-155 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi01g2073 zf-CCCH 3.7e-08 CL0537