Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2072 ATGGCCCCATCTAGAAAATCGAGGAGTGTGAATAAAAGGTTTTCTAATATTCGTGAAGCTTCCTCTTATAAAGATAAAAATGCAGAGAATGCTAGCAAGAATAGGCAGCCGGGAAGTCCTGGCATTCAGAAGAAGAGAAAATTGGCTGACATGTTAGGGCCGCAATGGAGTGAGGAGGAGCTTGAGCGTTTCTATGAAGCTTACCGTAAATATGGGAAAGACTGGAAGAAGGTTGCTGCTGCTGTACATAATAGATCTTTGGAAATGGTAGAAGCTCTGTACACTATGAATAGAGCTTACTTATCTCTTCCAGAGGGCACTGCTTCTGTGGTTGGACTCATAGCGATGATGACAGATCATTATAGTGTACTGGGAGGAAGTGATAGTGGACAAGAAAGCAATGAACATACAGAAACAGTTAGAAAGCCTCAAAAACGTTTGCGGGGAAAGTGCTTAGATGACAGCAATAAAGCATTAGATGGACATTTTTCAGATAATTCTCAGTCCCATTCTGTTGCATCAGGTGATGGTTGCTTGTCATTGTTGAAGAAGAGGCATTCTGGAATTAGGCCTCATGCAGTTCGAAAAAGGACTCCTCGTGTCCCTGTTTCATTTTCAATTGGTAAAGATATTGGGGAAAAGTATTTTTCACATGCAAGGCAAGGTTACAGACAAGTGGTTGATAGTAATGATGTTGCTCATAAGATTGCATTAGCATTGACAGAGGCTTCACAAAGAGGTGGCTCTTCCAAAGCTTCTGGAACACCAAATAAAAAAACTAAGGGCACTACGCCATCACCTGGTCAGAAAAATGGGAGGAAGCATGCTAAATCGGAAATAGCAGGAGCTAAGGTTCGCAGTTCTGACTTGAATGATGGTAGCTCTGAATTGAGTTTAGGAAGCACAGAAGTTGATAATGGAGGTTATTCTAAAAAATTGAGTCATTGGAGCGGTATAGAAAGTGCTGGAAGAGGAAAGAATCAAGAAAAGGAAATAAAATACCTGAAAGAGAAGTTAGAACTTGAAGAAAATATAAACAAGAATTTGGATGACGTTAAGGAAGCCTCCAGTGGGACAGATGATGGTAAAACAGTGGGTTTTGTCAAGTCTAAATTTGACACTAGTTTTGCAGATGCAAAAAATGCAAGGTCCTCTTACAAGGGTTCCTGGAAGAAAAGTAAGAAAGTATTGTTTGAAAAAGATGAAGGTTCTTCTTTTGATGCTCTGAAAACATTGGCTGATCTGTCTTTGATGATGCCAGTAACAAACCCTGATACTGAGTCATCTATTCGAGTGATGGTAGAAAACCATGATATTGTTGATGAGTCTAAAGTGGAACCCCATGCATTTTCGAGGGATGAAGGCACCACTTTAAGTAATTTGGGCAAAGTTTATTCTGATAACAGAGCTTCGGTTTCTCGAGCAGAGGGAGCCTACCAGCTTGATGCTGGAAAAAGGAAAAGGAAACAAAAATCGTTAACATTAAAAAATGATGAAACTCATACAGGTTCTCATTTAAGTGGTCCGCTGAGGAACAAGGCTACTGATGAGGTGAAGAAGTTGGTTGTTAAAGGTAAGCGCTCTTCTGTTTCTTCGTCACATTCAAGACAATCAAAGGTGGTGAAACCACCAGGAAAGATGTCTTCAGGTACTGATGACAAAGGGAAAAGAGACGATTCATCTTTATCACCCATCAAAGTTTCATCTACAAACCAAGTCAGTCTAGCAAACAAAGGAAGGCATAGAAAAAAGATGGAAAAACCAAAACCAATGGTCCAACAAGATACAAAGGGAAAGCTTATTAATTGCCTATCTTCACATAAAATTCGGCAATGGTGCGTCTTTGAGTGGTTTTATAGTGCTATAGATTACCCATGGTTTGCAAAAAGGGAGTTCATGGAGTACTTGGACCATGTTGGATTGGGTCATGTTCCTAGATTGACTCGTATTGAGTGGGGAGTCATTAGGAGTTCTCTTGGCAGACCACGGAGATTTTCTGAGCAATTTTTGATAGAAGAAAAAAATAAATTAAATCAATACCGGGAATCTGTTAGAATGCATTATGCAGAACTTCTTGCTGGTACCAGGGAAGGCTTGCCAACTGATTTGGCCAGGCCTTTAATTGTTGGACAGCGTGTTATTGCTGTTCACCCAAAGACGAGAGAGATTCATGATGGAAGTATACTAACTGTTGACAATTGTAGGTGTTGGGTTCAGTTTGACCAGCCTGAACTTGGGGTTGAATTTGTCATGGATATTGACTGCATGCCTCTGAATCCTTCCGAAAATATGCCCGCATCTCTGATAAGGCACAATGGAACTCCTGCTAAACAAAATGAGAAGCTTATTGAGCTCAAGCTTAATGGGAAACTGAAACAAGGAAAGATTGAAGAGTACAGGATATCATCCCCTGGTGTGAACTCAGATAACATTGAAGCTCCTTATATACCCCCCTCTGCTCATGGCATCAGCAGTTTATCAAAACAGGGCATTTCTTTGAGCTCCAAATCACAAGCTAATGTTGCCTGCTGTGAGATTGGTAATGTTCAACTATCAGCGACTTCTCAAGCTTTCTTTCTTGAACATGTCCAATCCAAAGAAGCTGGCATACTAGCTGTTTCTGAGCTGACTCGTGCACTTAAGAAGAAGGAACTTGTGTTGTCTGAACTGAAGAACATGAATGATGATGCATCAGAAAGCCAGAAATATGGGGACAATTCTTCCAAGGATTTGGAGCCATTTAAGAGGCATTATGCTGCAGTATTGTTGCAGTTAAATGAAGTGAATGACCAGGTTTCTTCTGCCTTGTTTTGCTTAAGACAGTGTAACACATATCAAGGGAACTCCTCCATGTTGTCACTAAAGCCCATGGCTAATTCTGATGATCCTGGTGGCCAAGCTAGCTCTTCAAACTGTTCAGCTTGTCACAACCAAGATATTAAATCTCATATATCTGAAATTGTTGAAAGTTCTAGAAAAAAAGCCCAAACAATGGTTGTTGCAGCTATGCAGGCAATTTCATCTTTTAGTAAGACAGAAGGTAAGGTTGAGAGAATTGAGGAGGCAATTAATTTTATAAATAATCAGATTTCAGTTGATGACCATGCTGCTCCAGCCGCGAAATTTATGCCTCCTGATTCTGTTCATGTCACTCTAGCTTCTCAGGATCAGTTGAGTGCTAGTAAATTAAATCCCTTTCCAAATAGTTATATACAAGATCCTGAACTAAACAGTTCATCTGACCAAAATGAAGTGAGAATTCCCTCAGAACTTATTTCTCACTGTCTAGCTACATTGCTCATGATTCAGTTATCATGGACCAACCAATGGGGTAACTTGCCAGTAGAGTGGGTGCTTCAAGTTCAAATGGATATGATGTGTCGGAAGTGTACAGAACGACAATTTCCCCCTGCTGATGTTGCTCATGTACTAGATTCTGCAGTCACCAGTTTGCAGCCATCTTGTTCAAAGAATCTTGCAATATATGGAGAAATACAAAAATGCATGGGTATCATAAGAAATCAGATATTAGCACTCATACCTACCTAG 3549 0.4024 MAPSRKSRSVNKRFSNIREASSYKDKNAENASKNRQPGSPGIQKKRKLADMLGPQWSEEELERFYEAYRKYGKDWKKVAAAVHNRSLEMVEALYTMNRAYLSLPEGTASVVGLIAMMTDHYSVLGGSDSGQESNEHTETVRKPQKRLRGKCLDDSNKALDGHFSDNSQSHSVASGDGCLSLLKKRHSGIRPHAVRKRTPRVPVSFSIGKDIGEKYFSHARQGYRQVVDSNDVAHKIALALTEASQRGGSSKASGTPNKKTKGTTPSPGQKNGRKHAKSEIAGAKVRSSDLNDGSSELSLGSTEVDNGGYSKKLSHWSGIESAGRGKNQEKEIKYLKEKLELEENINKNLDDVKEASSGTDDGKTVGFVKSKFDTSFADAKNARSSYKGSWKKSKKVLFEKDEGSSFDALKTLADLSLMMPVTNPDTESSIRVMVENHDIVDESKVEPHAFSRDEGTTLSNLGKVYSDNRASVSRAEGAYQLDAGKRKRKQKSLTLKNDETHTGSHLSGPLRNKATDEVKKLVVKGKRSSVSSSHSRQSKVVKPPGKMSSGTDDKGKRDDSSLSPIKVSSTNQVSLANKGRHRKKMEKPKPMVQQDTKGKLINCLSSHKIRQWCVFEWFYSAIDYPWFAKREFMEYLDHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEQFLIEEKNKLNQYRESVRMHYAELLAGTREGLPTDLARPLIVGQRVIAVHPKTREIHDGSILTVDNCRCWVQFDQPELGVEFVMDIDCMPLNPSENMPASLIRHNGTPAKQNEKLIELKLNGKLKQGKIEEYRISSPGVNSDNIEAPYIPPSAHGISSLSKQGISLSSKSQANVACCEIGNVQLSATSQAFFLEHVQSKEAGILAVSELTRALKKKELVLSELKNMNDDASESQKYGDNSSKDLEPFKRHYAAVLLQLNEVNDQVSSALFCLRQCNTYQGNSSMLSLKPMANSDDPGGQASSSNCSACHNQDIKSHISEIVESSRKKAQTMVVAAMQAISSFSKTEGKVERIEEAINFINNQISVDDHAAPAAKFMPPDSVHVTLASQDQLSASKLNPFPNSYIQDPELNSSSDQNEVRIPSELISHCLATLLMIQLSWTNQWGNLPVEWVLQVQMDMMCRKCTERQFPPADVAHVLDSAVTSLQPSCSKNLAIYGEIQKCMGIIRNQILALIPT 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2072 1182 MobiDBLite consensus disorder prediction 1 47 - -
Glsi01g2072 1182 MobiDBLite consensus disorder prediction 243 304 - -
Glsi01g2072 1182 ProSiteProfiles SANT domain profile. 51 88 IPR017884 -
Glsi01g2072 1182 MobiDBLite consensus disorder prediction 1 17 - -
Glsi01g2072 1182 Gene3D - 3 108 - -
Glsi01g2072 1182 MobiDBLite consensus disorder prediction 476 594 - -
Glsi01g2072 1182 Coils Coil 335 355 - -
Glsi01g2072 1182 Pfam LIN9 C-terminal 873 942 IPR045831 -
Glsi01g2072 1182 MobiDBLite consensus disorder prediction 526 544 - -
Glsi01g2072 1182 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 86 IPR017930 -
Glsi01g2072 1182 MobiDBLite consensus disorder prediction 288 304 - -
Glsi01g2072 1182 Pfam Myb-like DNA-binding domain 55 90 IPR001005 -
Glsi01g2072 1182 MobiDBLite consensus disorder prediction 125 147 - -
Glsi01g2072 1182 MobiDBLite consensus disorder prediction 562 576 - -
Glsi01g2072 1182 ProSiteProfiles Myb-like domain profile. 56 86 IPR001005 -
Glsi01g2072 1182 SUPERFAMILY Homeodomain-like 52 99 IPR009057 -
Glsi01g2072 1182 CDD SANT 56 90 IPR001005 -
Glsi01g2072 1182 Pfam DIRP 617 718 IPR033471 -
Glsi01g2072 1182 MobiDBLite consensus disorder prediction 243 271 - -
Glsi01g2072 1182 PANTHER LIN-9 1 1103 IPR010561 GO:0006351|GO:0017053
Glsi01g2072 1182 MobiDBLite consensus disorder prediction 480 498 - -
Glsi01g2072 1182 Coils Coil 873 900 - -
Glsi01g2072 1182 SMART sant 52 100 IPR001005 -
Glsi01g2072 1182 SMART DIRP_2 618 719 IPR033471 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2072 Glsi-ChrGlsi01 83816676 83852200 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi01g2072 DIRP 7.6e-30 No_clan