Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2063 ATGATTGGTGATAAAATTGTAATATCTAGAAAGATGTTGAATGGGGATATAGGCACATGGATTGCTCTTCCCAAGTTTGATGTTATTTTGGAAACCTCTAATTCAACGGCCATAACCATATCATTTGCAGCAGAAAGTGAGAGGAGCATCAATGGATCTGCATTGAAACAAATAAGTTACGAAACAGTTCAAGATCCTGAATCAGTGGTCGAAGAAGTACAAAGGAGCATCAATGGCTCAAGGAGAAATCTGGGTTTTCTTTCTTGTGTCACAGGCAATCCCATTGATGATTGCTGGAGGTGCGACCCAAACTGGCACAAGAACCGCAAGCGTTTAGTAGAGTGTTCCATTGGGTTCGGGAAGCAGGCAATTGGAGGGAGAGATGGTAAACTGTACGTGGTCAGAGACCCAGGCGATCACCCTGTGAACCCAAAGCCAGGAACTTTAAGACATGCAGTGATCCAAGAAGAGCCATTGTGGATCATCTTCAAGCGTGACATGGTGATCAAGCTGAAGCAGGAGCTTCTGATGAACTCCTTCAAGACCATCGATGGCAGAGGAGCTCGTGTCCACATTGCCGGTGGTTCCTGCATTACCATGCAGTTTGTGACCAACATCATCATTCATGGGATTAACATCCATGATTGCAAACGAGGTGGGAATGCTTATGTTAGGGACTCTCCTAAACATTATGGGTGGAGAACTCTGTCAGATGGTGATGGGATTTCAATCTTTGGGGGGAGCCATATTTGGGTGGATCATTGTTCTCTGTCGAATTGCCGTGATGGGTTAATTGATGCTATTCAGGGATCCACAGCCATCACTATCTCTAACAATTTCATGAGCCACCATAATAAGGTTATGCTTTTGGGTCATAGTGATAGTTATAAGCAAGACAAGAATATGCGAGTGACCATTGCCTTCAACCACTTTGGAGAAGGGCTTGTGCAGAGAATGCCGAGATGCAGACATGGTTACTTCCATGTGGTAAACAACGACTACAGCCATTGGAAGATGTATGCTATAGGAGGGAGTGCTTCCCCAACAATCAACAGCCAAGGCAACAGATTTCTTGCCCCCAATAAGAGAGTCTTCAAAGAGGTTACAAAGAGGGAGAATGCAGGAGAGAGGGAATGGAGGAAATGGAATTGGAGATCTTCAGGGGATATGATGCTAAACGGAGCGTTCTTCAGAGCATCAGGAGCAGGAGCATCTTCAAGTTATGCAAGAGCATCGAGCTTTGCAGCAAAATCATCGTCACTGGTCGGTTCTATAACATCAGGAGCTGGATCACTCATCTGCAAGAATGGTTTACGCTGCTGA 1323 0.4505 MIGDKIVISRKMLNGDIGTWIALPKFDVILETSNSTAITISFAAESERSINGSALKQISYETVQDPESVVEEVQRSINGSRRNLGFLSCVTGNPIDDCWRCDPNWHKNRKRLVECSIGFGKQAIGGRDGKLYVVRDPGDHPVNPKPGTLRHAVIQEEPLWIIFKRDMVIKLKQELLMNSFKTIDGRGARVHIAGGSCITMQFVTNIIIHGINIHDCKRGGNAYVRDSPKHYGWRTLSDGDGISIFGGSHIWVDHCSLSNCRDGLIDAIQGSTAITISNNFMSHHNKVMLLGHSDSYKQDKNMRVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYSHWKMYAIGGSASPTINSQGNRFLAPNKRVFKEVTKRENAGEREWRKWNWRSSGDMMLNGAFFRASGAGASSSYARASSFAAKSSSLVGSITSGAGSLICKNGLRC 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2063 440 SMART amb_all 166 363 IPR002022 -
Glsi01g2063 440 Pfam Pectate lyase 173 357 IPR002022 -
Glsi01g2063 440 Gene3D - 92 433 IPR012334 -
Glsi01g2063 440 SUPERFAMILY Pectin lyase-like 75 434 IPR011050 -
Glsi01g2063 440 PANTHER PECTATE LYASE 18-RELATED 60 437 IPR045032 GO:0030570
Glsi01g2063 440 FunFam Pectate lyase 92 433 - -
Glsi01g2063 440 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Glsi01g2063 440 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Glsi01g2063 440 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Glsi01g2063 440 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Glsi01g2063 440 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Glsi01g2063 440 PRINTS Pollen allergen Amb family signature 411 434 IPR018082 -
Glsi01g2063 440 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Glsi01g2063 440 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2063 Glsi-ChrGlsi01 83753855 83758072 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2063 63 440 Polysaccharide Lyase AT5G63180 76.762 0.0 608