Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2061 ATGAACCCAACGTCAGGAAATGAAAGAGGCTGCCCTAAGCACCATGCCTGTTTTGATCCTTGTTCCCCTTCTCGCCTCGCCCTATCCGACTGGACACCACATCTCGTCTTCAACTCATTCCGACACTGTGAGATCCTATGGTGCTTAACACTATTGGCATCATCTATTCTTTCCACAACCACTTCTCTTTCTTCCCCATTAACCTTCCATTCAGCATCTCCACCAGTAAGAGTGCTCATCACAGAATCGACATTGTATGTCAAACATCACAGCCAGGGCGTGAAACCATGTAAAGTCACGAGTCCTTCCTTGGGGTCGAGTTCCAATGAAGTGGGCATTGATTTGGAGACTGTCATCAGAGACAATGGCAAAGTTTCCTCCTCTGGCTCCATGGAAGTTCAAAACAGATATGAACTTACACTTGCAAGTGGCTTCTCATTTGCTGCTGCAGTGAACGACGCATCCCTCCTGCTTCTTATTGTTCTTGGGCTTTCTCTGTGTGCACTCGGGTGGACAAACAAAGGTTGGGAGGGGTCTGCACATGATACTAAAATTTTTAATGAGGCTGTACGCAGACCAAGCTTGCATTTTCCTCTTCCTCCTGAAGGTAAATACTATTTGGTCGATTCTGGCTATCCTACTTTTATGGGTTTCTTAGAAACCCCTACTTCAACGGTCAGACCGGGTTATATGCAGCAGAAAGTGATAGATGATGAAGGATATAGTCAGAGCATCAATGGCTCTGCATTGAAACAGTTAAGGTACGAAACAGTTCAAGATCCTGAACACGTAGTCGGAGAAGTACAAAGGAGCGTCAATGGCTCAAGGAGAAACCTGGGCTCTCTTTCCTGTGTCACAGGCAACCCCATTGATGATTGCTGGAGGTGCGACCCAAACTGGCACAAGAACCGCAAGCGTTTAGCAGTGTGTGCCATTGGGTTCGGGAAGCACGCAATTGGAGGGAGAGATGGTAAGCTGTACGTGGTCAGAGACCAAGGCGATGACCCTGTGAACCCAAAGCCTGGAACTTTAAGACATGCAGTGATCCAAGACGAGCCATTGTGGATCATCTTCGAGCGTGACATGGTGATCAAGATGAAGCAGGAGCTTCTGATGAATTCCTTCAAGACCATTGATGGCAGAGGAGCTCGTGTCCACATTGCTGGTGGACCCTGCATTGCCATAAAGTTTGCAACCCACATCATCATTCATGGGATTAACATCCATGATTGCAAACAAGGTGGGAATGCCTATGTTAGGGACTCTCCTAAACATTATGGGTGGAGGTCTCTGTCAGATGGTGATGGGATTTCAATCTTTGGGGGGAGCCACATTTGGGTGGATCATTGTTCTCTGTCGAATTGTCGTGATGGGTTAATTGATGCTACTCATGGATCCACGGCCATCACTATCTCTAACAATTTCATGAGCTACCATAATAAGGTTATGCTTTTGGGTCATAGTGATAGTTATAAGCAGGACAGGAATATGCAAGTGACCGTTGCCTTCAACCGCTTTGGAGAAGGGCTTGTGCAGAGAATGCCGAGATGCAGACATGGTTACTTCCATGTGGTGAACAACGACTACAACCATTGGAAGATGTATGCTATAGGAGGGAGTGCTTCCCCAACAATCAACAGCCAAGGCAACAGATTTCTTGCCCCCGACAACAAAGTCTTCAAAGAGGTTACGAAGAGGGAGTATGCAGGAGAGACGGAGTGGAGGAAATGGAATTGGAGATCTTCAGGGGACATGATGCTAAACGGAGCGTTCTTCAGAGCATCAGGAGCAAAAGCATCTTCAAGTTATGCAAGAGCATCGAGCTTTGCAGCAAAATCATCGTCACTGGTCGGTTCTATTACAGCAGGAGCTGGATCACTCATCTGCAGAGAGGGCTTACGCTGTTGA 1908 0.4706 MNPTSGNERGCPKHHACFDPCSPSRLALSDWTPHLVFNSFRHCEILWCLTLLASSILSTTTSLSSPLTFHSASPPVRVLITESTLYVKHHSQGVKPCKVTSPSLGSSSNEVGIDLETVIRDNGKVSSSGSMEVQNRYELTLASGFSFAAAVNDASLLLLIVLGLSLCALGWTNKGWEGSAHDTKIFNEAVRRPSLHFPLPPEGKYYLVDSGYPTFMGFLETPTSTVRPGYMQQKVIDDEGYSQSINGSALKQLRYETVQDPEHVVGEVQRSVNGSRRNLGSLSCVTGNPIDDCWRCDPNWHKNRKRLAVCAIGFGKHAIGGRDGKLYVVRDQGDDPVNPKPGTLRHAVIQDEPLWIIFERDMVIKMKQELLMNSFKTIDGRGARVHIAGGPCIAIKFATHIIIHGINIHDCKQGGNAYVRDSPKHYGWRSLSDGDGISIFGGSHIWVDHCSLSNCRDGLIDATHGSTAITISNNFMSYHNKVMLLGHSDSYKQDRNMQVTVAFNRFGEGLVQRMPRCRHGYFHVVNNDYNHWKMYAIGGSASPTINSQGNRFLAPDNKVFKEVTKREYAGETEWRKWNWRSSGDMMLNGAFFRASGAKASSSYARASSFAAKSSSLVGSITAGAGSLICREGLRC 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2061 635 Pfam Pectate lyase 396 552 IPR002022 -
Glsi01g2061 635 Gene3D - 287 628 IPR012334 -
Glsi01g2061 635 SMART amb_all 361 558 IPR002022 -
Glsi01g2061 635 FunFam Pectate lyase 287 628 - -
Glsi01g2061 635 PRINTS Pollen allergen Amb family signature 369 385 IPR018082 -
Glsi01g2061 635 PRINTS Pollen allergen Amb family signature 310 327 IPR018082 -
Glsi01g2061 635 PRINTS Pollen allergen Amb family signature 433 454 IPR018082 -
Glsi01g2061 635 PRINTS Pollen allergen Amb family signature 606 629 IPR018082 -
Glsi01g2061 635 PRINTS Pollen allergen Amb family signature 577 601 IPR018082 -
Glsi01g2061 635 PRINTS Pollen allergen Amb family signature 333 358 IPR018082 -
Glsi01g2061 635 PRINTS Pollen allergen Amb family signature 513 532 IPR018082 -
Glsi01g2061 635 PRINTS Pollen allergen Amb family signature 535 554 IPR018082 -
Glsi01g2061 635 PANTHER PECTATE LYASE 18-RELATED 253 632 IPR045032 GO:0030570
Glsi01g2061 635 SUPERFAMILY Pectin lyase-like 288 625 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2061 Glsi-ChrGlsi01 83711784 83723192 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2061 258 635 Polysaccharide Lyase AT5G63180 74.151 0.0 588