Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2060 ATGGCTATTCCACTGATCTCATTTCTGCCACTCTTTCTCCTCCTTCTTTCCCCTCCCTTTATTTTCTCTTCCCCACTTCAACATCCTGAATTAGAAGTCGAACAAGTTCAAAGGAGCATCAATGGCTCTGCATTGAAACAGTTAAGGTACGAAACAGTTCAAGATCCTGAACACGTAGTCGGAGAAGTACAAAGGAGCGTCAATGGCTCAAGGAGAAACCTGGGCTCTCTTTCCTGTGTCACAGGCAACCCCATTGATGATTGCTGGAGGTGCGACCCAAACTGGCACAAGAACCGCAAGCGTTTAGCAGTGTGTGCCATTGGGTTCGGGAAGCACGCAATTGGAGGGAGAGATGGTAAGCTGTACGTGGTCAGAGACCAAGGCGATGACCCTGTGAACCCAAAGCCTGGAACTTTAAGACATGCAGTGATCCAAGACGAGCCATTGTGGATCATCTTCGAGCGTGACATGGTGATCAAGATGAAGCAGGAGCTTCTGATGAATTCCTTCAAGACCATTGATGGCAGAGGAGCTCGTGTCCACATTGCTGGTGGACCCTGCATTGCCATAAAGTTTGCAACCCACATCATCATTCATGGGATTAACATCCATGATTGCAAACAAGGTGGGAATGCCTATGTTAGGGACTCTCCTAAACATTATGGGTGGAGGTCTCTGTCAGATGGTGATGGGATTTCAATCTTTGGGGGGAGCCACATTTGGGTGGATCATTGTTCTCTGTCGAATTGTCGTGATGGGTTAATTGATGCTACTCATGGATCCACGGCCATCACTATCTCTAACAATTTCATGAGCTACCATAATAAGGTTATGCTTTTGGGTCATAGTGATAGTTATAAGCAGGACAGGAATATGCAAGTGACCGTTGCCTTCAACCGCTTTGGAGAAGGGCTTGTGCAGAGAATGCCGAGATGCAGACATGGTTACTTCCATGTGGTGAACAACGACTACAACCATTGGAAGATGTATGCTATAGGAGGGAGTGCTTCCCCAACAATCAACAGCCAAGGCAACAGATTTCTTGCCCCCGACAACAAAGTCTTCAAAGAGGTTACGAAGAGGGAGTATGCAGGAGAGACGGAGTGGAGGAAATGGAATTGGAGATCTTCAGGGGACATGATGCTAAACGGAGCGTTCTTCAGAGCATCAGGAGCAAAAGCATCTTCAAGTTATGCAAGAGCATCGAGCTTTGCAGCAAAATCATCGTCACTGGTCGGTTCTATTACAGCAGGAGCTGGATCACTCATCTGCAGAGAGGGCTTACGCTGTTGA 1293 0.4733 MAIPLISFLPLFLLLLSPPFIFSSPLQHPELEVEQVQRSINGSALKQLRYETVQDPEHVVGEVQRSVNGSRRNLGSLSCVTGNPIDDCWRCDPNWHKNRKRLAVCAIGFGKHAIGGRDGKLYVVRDQGDDPVNPKPGTLRHAVIQDEPLWIIFERDMVIKMKQELLMNSFKTIDGRGARVHIAGGPCIAIKFATHIIIHGINIHDCKQGGNAYVRDSPKHYGWRSLSDGDGISIFGGSHIWVDHCSLSNCRDGLIDATHGSTAITISNNFMSYHNKVMLLGHSDSYKQDRNMQVTVAFNRFGEGLVQRMPRCRHGYFHVVNNDYNHWKMYAIGGSASPTINSQGNRFLAPDNKVFKEVTKREYAGETEWRKWNWRSSGDMMLNGAFFRASGAKASSSYARASSFAAKSSSLVGSITAGAGSLICREGLRC 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2060 430 SMART amb_all 156 353 IPR002022 -
Glsi01g2060 430 Pfam Pectate lyase 191 347 IPR002022 -
Glsi01g2060 430 SUPERFAMILY Pectin lyase-like 83 420 IPR011050 -
Glsi01g2060 430 Gene3D - 82 423 IPR012334 -
Glsi01g2060 430 PRINTS Pollen allergen Amb family signature 128 153 IPR018082 -
Glsi01g2060 430 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Glsi01g2060 430 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Glsi01g2060 430 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Glsi01g2060 430 PRINTS Pollen allergen Amb family signature 228 249 IPR018082 -
Glsi01g2060 430 PRINTS Pollen allergen Amb family signature 401 424 IPR018082 -
Glsi01g2060 430 PRINTS Pollen allergen Amb family signature 164 180 IPR018082 -
Glsi01g2060 430 PRINTS Pollen allergen Amb family signature 372 396 IPR018082 -
Glsi01g2060 430 FunFam Pectate lyase 82 423 - -
Glsi01g2060 430 PANTHER PECTATE LYASE 18-RELATED 48 427 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2060 Glsi-ChrGlsi01 83694709 83696756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2060 53 430 Polysaccharide Lyase AT5G63180 74.151 0.0 587