Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2049 ATGGATAATGGGTTCTCTTCTCGACGGGGTGCCTTTCCGGCTGGTCTGCGAGTTCTCGTTGTTGATGACGATGTAACATGGCTGAAGATCCTTGAGAAGATGCTGAAGAAGTGCTCTTACGAAGTGACAACATGTTGTTTAGCAAGAGAGGCTCTAAACTTACTTCGCGAAAGGAAAGATGGATATGACATAGTGATCAGTGATGTAAACATGCCTGATATGGATGGTTTTAAACTTCTCGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATCATGATGTCTGTTGATGGAGAAACAAGGAGGGTGATGAAAGGTGTTCAGCATGGAGCATGTGACTATCTCCTTAAGCCTATAAGGATGAAAGAACTACGAAATATATGGCAACATGTCTTCAGAAAAAGGATACACGAGGCAAGAGAATTTGGAAGTCTTGAGGGCATTCACTTAATGAGAAACGGATCAGATCAGTGTGATGATGGGAGCTTGTTTGCTGTAGAAGATACAGCCTCAACGAAGAAAAGGAAAAATTTAGATAAAAAACAGGATGACAAAGAATTTGGAGATCAATTTTCTATGAAGAAAGCTAGAGTAGTTTGGTCTGTAGATCTTCATCAGAAATTTGTTAAGGCTGTGAATCAGATCGGATTTGATAAAGTTGGTCCCAAGAGAATACTTGATTTGATGAATGTTCCATGGTTGACTAGGGATAACGTTGCTAGCCACTTACAGAAATACCGGCTCTACTTGAGTAGGTTGCAGAGGGATAACGATCAGACTTCTTCCACAAGTGGGATTCAGCATTCAGATTTACTGTCAAAAGATCCTGCAGGAAGTTTTGATTTTCAGAACACAAGGAACACGCAGCAAAATGATGTTTCAATTGACAGCTACAGCTATTCAGATGGAACGTTACAACTTCAGAACGTGGAGGCTAGAAGTCATGAAGGTGATATCAAAAGAGTCGCATCAGAGTCTAAGATAGAAAGAACAGATTTGACTGGGAACATTCATGAACCAAAGATAAGGAGTTCACAGATGGGTCATGATCAATCTTTTGCACCTCCAGATTCAGAAGGAAACTGTGCAGCATTTGATTGCACCACTCCAACACAGTACTCTTGGAGTGAATTTCCAGAAATGCAACTCAAAGAACATAAGTCACTTCTTCCACTAAAGGATAGCTTCAGCCAGTTGCCATTACATGGTACACAGCATCACATCCAGGTTGTTGATCATTTACAAACAAATGCTTCAGTCAGTTCTAATCCTTCTGTAACACAGGGAGAAACTGCTGCCTGTATCAAAACCAAGCCTTTATATGCTGATTACAAGAGTGGATACGCCAGTTCTGTGAGTTCTATAGGGAATGCAGACACCTTTTCTATGCAGTTGAATAACTTTATGGTGAATGAACAATCTATAGAGGCAATTTCCTCTTCCAATTTGGGCTTGAAAGCTCAGGACTTTGATCTCAGTTGCATTTCTGACCTGGAATTTTACCAAAGAAACCTACCTTTTGGGGGTGAGGTAGCTTCCACGCCTTTGGATGAGCACTTGCAATTCTGTTGTCGACCACGTGAATATTGTAATATGAACTTTGGACTGCAGAATATAGATATGCCAGAGTATTATGATCCAGGGCTCATTGCGGAAGTTCCAACTCACTTATGTGATACAGCCGAGTATTCAGCTGTAGATCAAGGCCTATTCATAGCATGA 1722 0.4106 MDNGFSSRRGAFPAGLRVLVVDDDVTWLKILEKMLKKCSYEVTTCCLAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETRRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFGSLEGIHLMRNGSDQCDDGSLFAVEDTASTKKRKNLDKKQDDKEFGDQFSMKKARVVWSVDLHQKFVKAVNQIGFDKVGPKRILDLMNVPWLTRDNVASHLQKYRLYLSRLQRDNDQTSSTSGIQHSDLLSKDPAGSFDFQNTRNTQQNDVSIDSYSYSDGTLQLQNVEARSHEGDIKRVASESKIERTDLTGNIHEPKIRSSQMGHDQSFAPPDSEGNCAAFDCTTPTQYSWSEFPEMQLKEHKSLLPLKDSFSQLPLHGTQHHIQVVDHLQTNASVSSNPSVTQGETAACIKTKPLYADYKSGYASSVSSIGNADTFSMQLNNFMVNEQSIEAISSSNLGLKAQDFDLSCISDLEFYQRNLPFGGEVASTPLDEHLQFCCRPREYCNMNFGLQNIDMPEYYDPGLIAEVPTHLCDTAEYSAVDQGLFIA 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2049 573 FunFam Two-component response regulator 192 254 - -
Glsi01g2049 573 SUPERFAMILY CheY-like 15 139 IPR011006 -
Glsi01g2049 573 Pfam Myb-like DNA-binding domain 197 247 IPR001005 -
Glsi01g2049 573 MobiDBLite consensus disorder prediction 257 295 - -
Glsi01g2049 573 SUPERFAMILY Homeodomain-like 193 252 IPR009057 -
Glsi01g2049 573 SMART REC_2 16 128 IPR001789 GO:0000160
Glsi01g2049 573 MobiDBLite consensus disorder prediction 278 295 - -
Glsi01g2049 573 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 308 IPR045279 GO:0009736
Glsi01g2049 573 NCBIfam myb-like DNA-binding domain, SHAQKYF class 195 248 IPR006447 GO:0003677
Glsi01g2049 573 Pfam Response regulator receiver domain 18 127 IPR001789 GO:0000160
Glsi01g2049 573 CDD REC_typeB_ARR-like 18 132 - -
Glsi01g2049 573 Gene3D - 192 254 - -
Glsi01g2049 573 Gene3D - 16 186 - -
Glsi01g2049 573 ProSiteProfiles Response regulatory domain profile. 17 132 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2049 Glsi-ChrGlsi01 83608384 83612237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2049 12 253 Response Regulator Gene Family AT2G25180 54.086 1.87e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Glsi01g2049 Response_reg 8.9e-24 CL0304