Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2019 ATGATGGATATTGCTGAGGTTGAAGAAAATTTGTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAAGGTTCTTTCAGCAACATATTGCAAAGTATTGTCAATATTTCCAGATCTGGAAGCAGCTAGGCCTAGGAGCAAATCTGGCATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAGAAGGCCAAGAATGTTCTTCAGCATTGCTCACAGTGTAGTAAGCTTTATTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAAGCGGGTTGAAGATATTGTTCCACAGTCTATTGGCTGTCAGATTCAGGAGATTGTGAATGAACTCGAAAGCATGTCATTTGCACTTGACCCAGTAGAGAAGCAAATTGGTGATGATTTAATAGCTTTGCTCCAGCAGGGGAGAAAGTTTAATAGCTCTAATGACAGTAGTGAGCTTGAATGTTTTCACCAGGCCGCTACCAGACTTGGAATCACATCTTCAAGAGTAGCTCTTACTGAAAGAAGAGCTCTCAAGAAACTTATTGATAGAGCTCGGGCTGAGGAAGATAAGCGGAAGGAATCAATTGTTGCATATCTTTTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCAGATGATAATGATTCACAGGGTTCTGCACCTTGTTCTCCCACTGTACAGGGCTCTGTTGAAGACGGTGTCACTGGTGGTCATTGTCAGGCCTTTGACAGACAGCTTTCAAAACTTAGTTCTTTTAATTTTAAGCCAATAAATAGGAAATCAGGGCAGATACCCCTTCCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGATCCTGTCATCATTTCTTCTGGGCAAACATATGAAAGGGTTTGCATAGAGAAATGGTTGAGTGATGGGCATAACACCTGCCCAAAGACTCAACAGAAACTTTCTCATCTATCATTGACTCCTAATTACTGTGTCAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTTCTATTCCTGATGGCCCTCCTGAATCTCTTGACCTTAATTACTGGAGATTGGCATTATCAGAGTCTGAATCAACAAACTCCAGATCTGTAAACAGTGTTAACTCTTGCAAGTTGAAGGGTGTCAAAGTGGTTCCACTAGAAGAAAGTAGCGTTTCACAGGAAACCGGAGAAAATGGAAATGAAAGTGTGTCTGCACAAGAGGAAGATACTGAGCAGTATCTTGGTTTTCTGAAAGTCTTGACTGAAGGGAACAGTTGGAAGAGGAAATGTAAAGTGGTAGAAAGGTTAAGGCTGTTGCTGAGAGATGATGAAGAAACCAGGATTTTCATGGGGGCCAATGGTTTTGTTGAAGCACTTTTGCAGTTTTTGCAATCAGCGGTGAATGAAAGGAATGTGATGGCTCAAGAAAGTGGAGCGATGGCTCTCTTTAACCTTGCTGTGAATAATAATAGAAATAAGGAAATTATGTTAGAGGCAGGGGTATTATCATTGCTGGAGGAAATGATTTCTAATTCCAGTTCTTATGGTTGTGCAACGGCACTCTATCTGAACCTCTCTTGCCTTGAAAAGGCCAAGCCTATGATTGGCATGAGTCAGGCTGTCCAGTTCCTCATCCAGCTCCTTCAACATAACACTGAAATCCAGTGCAAGCAAGATTCCCTCCATGCACTCTATAATCTGTCTACAGTCCCCTCCAATATCCCAAACCTCCTGTCACTTGGCATCATTAGTGGCCTTCAATCCCTTCTTGCAGGCCAGGGTGATTGCATGTGGACGGAAAAATGCATAGCTGTTTTGATCAATTTGGCTGCTTCTCAGTTGGGAAAGGAGGAAATGATATCATCTCCCGGACTCATAAACGCATTGGCTACCATATTGGACACTGGCGAGCTCCTAGAGCAGGAGCAAGCTGTTTCTTGTCTCTTAATTTTGTGTAATGGGAATGAAAAATGTAGCCTGATGGTTCTGCAAGAAGGGGTAATACCTGCATTGGTGTCAATATCGGTGAATGGGACCTCAAGAGGAAGAGAGAAAGCTCAGAAACTCTTGATGCTGTTTCGAGAGCAGCGGCAGCGAGATCATTCGCCGCCTAAGACATGTCAGACATGTCAGTTCCCGGCTGAAACCAGTGATATGCCTATGCCACCACCTCCAGAAACGAAACCGCTATACAAGTCAATGTCTAGAAGAAAGGTGGGGAAAGCTTTTAGCTCTTTATTGAAAAGCAAGAGCTATTCCGTATACCAGTGTTGA 2310 0.4247 MMDIAEVEENLFAASDAKLHGEMCKVLSATYCKVLSIFPDLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSQCSKLYLAITGDSVLLKFEKAKCALEDSLKRVEDIVPQSIGCQIQEIVNELESMSFALDPVEKQIGDDLIALLQQGRKFNSSNDSSELECFHQAATRLGITSSRVALTERRALKKLIDRARAEEDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVQGSVEDGVTGGHCQAFDRQLSKLSSFNFKPINRKSGQIPLPPEELRCPISLQLMYDPVIISSGQTYERVCIEKWLSDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVSIPDGPPESLDLNYWRLALSESESTNSRSVNSVNSCKLKGVKVVPLEESSVSQETGENGNESVSAQEEDTEQYLGFLKVLTEGNSWKRKCKVVERLRLLLRDDEETRIFMGANGFVEALLQFLQSAVNERNVMAQESGAMALFNLAVNNNRNKEIMLEAGVLSLLEEMISNSSSYGCATALYLNLSCLEKAKPMIGMSQAVQFLIQLLQHNTEIQCKQDSLHALYNLSTVPSNIPNLLSLGIISGLQSLLAGQGDCMWTEKCIAVLINLAASQLGKEEMISSPGLINALATILDTGELLEQEQAVSCLLILCNGNEKCSLMVLQEGVIPALVSISVNGTSRGREKAQKLLMLFREQRQRDHSPPKTCQTCQFPAETSDMPMPPPPETKPLYKSMSRRKVGKAFSSLLKSKSYSVYQC 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2019 769 Gene3D - 546 706 IPR011989 -
Glsi01g2019 769 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Glsi01g2019 769 Gene3D - 427 545 IPR011989 -
Glsi01g2019 769 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Glsi01g2019 769 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Glsi01g2019 769 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Glsi01g2019 769 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Glsi01g2019 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Glsi01g2019 769 PANTHER U BOX DOMAIN-CONTAINING 24 709 - -
Glsi01g2019 769 SUPERFAMILY ARM repeat 429 707 IPR016024 -
Glsi01g2019 769 SMART arm_5 539 581 IPR000225 GO:0005515
Glsi01g2019 769 SMART arm_5 501 538 IPR000225 GO:0005515
Glsi01g2019 769 SMART arm_5 455 499 IPR000225 GO:0005515
Glsi01g2019 769 CDD RING-Ubox_PUB 281 333 IPR045210 -
Glsi01g2019 769 SUPERFAMILY RING/U-box 280 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2019 Glsi-ChrGlsi01 83441600 83445466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2019 2 768 U-box Gene Family AT1G24330 67.949 0.0 1056