Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2006 ATGAAGCCCATGGCAATATTCCTAGTGAACTTGTCGTTCCTCATACTTGCTCTCGGAAGTTCTTGGCCTCTGACTCTCTCTCTCTTCATATTCCTCGCTCTCTTCGCTATCTCCCTAAATTATTGGTTTGTCCCCGCAGGCTTTGCATGGAGGAATTTCGTCCATTATTATTCTCAGGAACCTATCAAAGGTCCAATGGGATGGCCTATCTTGGGGACTTTGCCTCAAATGGGTTCTCTGGCTCACAAAAACCTCGCAGCCATGGCCACTTCCTTAAACGCAGAGAGGCTCATGGCCTTCAGTCTAGGAGCCACGCGGGTTATTATCAGCAGCCACCCTGAGACTGCTAGGGAAATCCTATGCGGCTCATCCTTCTCAGACCGTCCAATCAAAGAATCAGCTCGCTTGCTCATGTTCGAGCGCGCCATTGGCTTCGCTCCCTCCGGCACCTATTGGCGCCATCTCCGTCGAATCGCAGCCTCCCACATGTTCTCCCCGAGGAGAATCTCCGGCCTAGAGGGCCTCCGGAGACACGTGGCAAACGAAATGGTGAGGAGAGTGTGGAAGGAGATGGAGGACAAAGGGTCAGTGGAAGTTCGGAGTATATTCCAGGAAGGGTCTTTAAGGAATATACAGGAGAGTGTGTTTGGGACTTGTTTGAGTTCAGAAAAGGATGAGTTAGGGAGTCTGGTTAAGGAAGGGTACGAGTTAATTGTTAAGTTTAACTGGGAAGATTATTTTCCTTTCAAATTTTTGGACTTTCATGGGGTAAAGAGAAGGTGTCACAAATTGGCGGCCAAAGTTAATAAATTGGTGGGTCAAATTGTGGAAGACCGAAAACGAACTGGGGATTTAGTTGGGCAGAATGATTTTCTCAGCACTCTCCTGTCCTTGCCCAAAGAGGAAAGGTTAAGTAATTCAGATATGGTGGCTATTTTGTGGGAAATGATATTTCGAGGAACAGACACAGTTGCTATACTTCTTGAATGGATCATGGCGAGGATGGTTTTACACCAAGACATACAAACGAAAGCACGCCAAGAGATTGATAGGTGCATCGGCCAACACGGTCACGTGCGAGATTCCGACATTCCAAACCTCCCTTACCTCCAAGCCATAGTCAAAGAAGTACTCCGGCTGCATCCACCGGGGCCTTTGCTCTCGTGGGCCCGCCTTGCTGTCCATGACGTCCATGTGGGCAAGTTCTTTGTGCCAGCTGGCACAACAGCAATGGTTAACATGTGGGCCATAACACATGACTCGGTTATTTGGGAGGACCCCTGGGCCTTCAAGCCTGAACGATTCATAAAAGAGGAAGTATCCGTCATGGGTTCGGACCTGAGGCTCGCACCATTCGGCGCGGGGCGAAGGGTGTGCCCGGGAAGAGCACTAGGTCTGGCCACAGTCCATCTCTGGCTTGCACATCTTCTCCACCGCTTCATATGGCTTCCGGCACACTCCGTGGACCTATCAGAGTGTCTCAAGCTCTCTCTTGAAATGAAAAAACCTCTGCAATGTCAAGTGATTCCTAGAAACACTACAACTTAA 1548 0.4942 MKPMAIFLVNLSFLILALGSSWPLTLSLFIFLALFAISLNYWFVPAGFAWRNFVHYYSQEPIKGPMGWPILGTLPQMGSLAHKNLAAMATSLNAERLMAFSLGATRVIISSHPETAREILCGSSFSDRPIKESARLLMFERAIGFAPSGTYWRHLRRIAASHMFSPRRISGLEGLRRHVANEMVRRVWKEMEDKGSVEVRSIFQEGSLRNIQESVFGTCLSSEKDELGSLVKEGYELIVKFNWEDYFPFKFLDFHGVKRRCHKLAAKVNKLVGQIVEDRKRTGDLVGQNDFLSTLLSLPKEERLSNSDMVAILWEMIFRGTDTVAILLEWIMARMVLHQDIQTKARQEIDRCIGQHGHVRDSDIPNLPYLQAIVKEVLRLHPPGPLLSWARLAVHDVHVGKFFVPAGTTAMVNMWAITHDSVIWEDPWAFKPERFIKEEVSVMGSDLRLAPFGAGRRVCPGRALGLATVHLWLAHLLHRFIWLPAHSVDLSECLKLSLEMKKPLQCQVIPRNTTT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2006 515 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 452 461 IPR017972 GO:0005506|GO:0016705
Glsi01g2006 515 FunFam Cytochrome P450 78A5 55 511 - -
Glsi01g2006 515 SUPERFAMILY Cytochrome P450 63 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi01g2006 515 PRINTS E-class P450 group I signature 459 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi01g2006 515 PRINTS E-class P450 group I signature 371 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi01g2006 515 PRINTS E-class P450 group I signature 449 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi01g2006 515 PRINTS E-class P450 group I signature 308 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi01g2006 515 PRINTS E-class P450 group I signature 328 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi01g2006 515 PRINTS E-class P450 group I signature 413 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi01g2006 515 CDD CYP78 93 504 - -
Glsi01g2006 515 Pfam Cytochrome P450 63 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi01g2006 515 PANTHER CYTOCHROME P450 78A7-RELATED 24 511 - -
Glsi01g2006 515 Gene3D Cytochrome P450 55 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi01g2006 515 PRINTS P450 superfamily signature 319 336 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi01g2006 515 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi01g2006 515 PRINTS P450 superfamily signature 459 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi01g2006 515 PRINTS P450 superfamily signature 450 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2006 Glsi-ChrGlsi01 83355400 83357058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2006 11 511 Cytochrome P450 AT1G74110 52.060 0.0 535