Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1992 ATGATCTGTCAATTTCACGGGAGCCCAATAATGAGTGATGTTTTCATTATCTCATCACCTCCACTGCCTCCTCCTGCTGCAGCAAATTCTGATCAGAAGTCCAGCTTGCCCATGTTGTACTATGGCCTACTAGTGGTCGGAACCGCAGCCATAGTTTTAGCCGTGTACAATCTTATCATCATCAAAAGGTGTCGACGGCGCCATATGCAATCATCAACATCACAGGCTGCAGGGCCAAATCGGCTGGTTGAGGTAGTCGCAGCTAGTAGGAGTGTTGAGAACTCATTGAACAGGAACTTGCTTTCAAGCTTCAAGTACAAGAAAGAAGGAGGAGGAGGAGGTGGTGAGGGAGAAGAGCAAAAAGGTGGGGATTATGATTATGAATGCCCAGTTTGCTTATCGGCGTTTGAAGAAGGGGAGGAGGTGAGGAAGCTACCGCGGTGCAAGCACTCCTTCCATGCTCTTTGCATAGACATGTGGCTTTACTCACACTTCGACTGCCCAATTTGTCGAACACCGGTTGGGCCATTTTGTCACCGTTTTCCGGCTGAGAATTCTCGTGAGGGTTTGCTGGAATCCGGCACCACATTTTGA 594 0.4865 MICQFHGSPIMSDVFIISSPPLPPPAAANSDQKSSLPMLYYGLLVVGTAAIVLAVYNLIIIKRCRRRHMQSSTSQAAGPNRLVEVVAASRSVENSLNRNLLSSFKYKKEGGGGGGEGEEQKGGDYDYECPVCLSAFEEGEEVRKLPRCKHSFHALCIDMWLYSHFDCPICRTPVGPFCHRFPAENSREGLLESGTTF 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1992 197 CDD RING-H2_EL5-like 128 171 - -
Glsi01g1992 197 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 32 174 IPR044675 -
Glsi01g1992 197 FunFam RING-H2 finger protein ATL1 80 176 - -
Glsi01g1992 197 SUPERFAMILY RING/U-box 125 179 - -
Glsi01g1992 197 Pfam Ring finger domain 128 171 IPR001841 -
Glsi01g1992 197 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Glsi01g1992 197 SMART ring_2 129 170 IPR001841 -
Glsi01g1992 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 175 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1992 Glsi-ChrGlsi01 83263868 83264461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1992 43 174 C3H Transcription Factor Family AT5G17600 37.956 3.66e-21 87.8