LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi01g1989	ATGAAAGCTGCGAATGCATTGGGAGCCAGGACAGCACGAGCCTGCGATAGCTGCTTACGCAGAAGGGCACGTTGGTTTTGTGCAGCTGATGATGCTTTCCTCTGCCAAGGCTGCGATAATTTGGTTCACTCTGCAAATCAATTAGCCAGCAGACATGAAAGGGTTCGCCTTCACACTGCGTCCTCTGAGCTCAACTCCTCTGTGACCCCACAGGCATGGCACAGTGGATTCACACGAAAGGCAAGAACACCACGTCATAATAAGCACTTACTAGTGAAGCAGGAAAGAATTTCTAAAGATGAAGAAGAGTTTTTCAATACCCTTCTTGTTGTGCCCGACCTCGGAAATAATGAGGAACCTGTGTTCGATGAGACTGAGGAGCAGCTGCTTTATCGGGTGCCTGTGTTTGACCCTTTTGACATATTGGAAACCACCATGAAACCAGATGTTGGTGATGACGTTGAAGAAACACATGATTTGGACAATTTTTCTGAGATCCTTCCATCGGATGTGGATCTTGCTGAGTTTGTAGCTGATGTTGAAAACTTACTTGGAAGTGCAGGGCTCAATGAGGATTCCGGCGAAATGAAAGGACAAGAACTGTTTGATTGTAAAGAAGACGAAGACAAAAGATCAATGAAGGTTAAGGATGAACAACTTGAAGCTGATACAGCTTTCCATTTGGAGCCAGTTCTGGGCATTACAGGACAGGAAGAGGAGGAGAAGTTGGTCGTACTGGTGGCGGCAAATGATAGTGTCAGTGAGAACAAGATGTTTTTGAGGCTAAACTACGAGGAGGTCATTTCTGCTTGGGACAGCCAAGGTTGTCCGTGGACGACGGGAAATCCACCCCACTTCAACTCTCATGACTGCTTGGGTTCGAGTGGTGGAGATATTGGATGCTATTACGGGGATGTAGGAAGCTTAAGGGGAGGTATAGTTGATGGGGGAAGAGAAGCAAGAGTATCAAGGTACAGAGAGAAGAGAAGGACGCGTTTGTTTGCGAAGAAGATAAGATTGTTATACTCGTTTGGATTTTCAGAGTTCACTCTGTTTCAATTTCGAGAGGTTGACGAATTTGATTACGAAGCGGAAATGCTTACATGCATAGCTCGTCCTAAGAAACTCGGGAATGAGTCACTGAGTCAGCCCGAGGAATCCGATTCGACCAACTCAAACGCCGCCAAAAATCAAGCAACCAAATCCCTCACTTCTCAGCTCAAGGATATGGCCTTGAAAGCATCGGGAGCTTACAAGCATTGCAATCCCTGCACGGGACCACCGACTCAGAGTCGACCCAGGATCAACACTGAGTCAGACGCGGAGTCGGATCGGTTCCGATGGTCGTACAGGCGAACTGGGAGCTCAAGCTCGACAACGACAAGGACATGGGGGAAGGAGATGGAAGCGAGGCTGAAGGGGATTTCGAGCGGGGAGGGGACGCCGAACTCCGCCAGTGGACGGCGGGTGGAGCCGGTGGTGTTGTTCATCGAAGAGAATGAACCTAAAGAGTGGGTGGCGCAGGTGGAGCCCGGCGTTTTAATCACCTTTGTTTCACTTCCGAGTGGTGGGAATGATCTGAAGCGGATACGGTTCAGTCGGGAAATGTTTAACAAATGGCAAGCTCAAAGATGGTGGGCAGAGAACTATGACAGGGTCATGGAACTTTACAATGTTCAAAGGCTTAACCGCCAAGCTTGCCCTCTTCCAACACCGCCAAGATCTGAAGATGAGAGCTCAAAGCTTGAATCAGTAGAGGATAGCCCTGTAACACCTCCACTAACCAGAGAGCGGTTACCTCGTAACTTGTACCGCCCAACAGGGATGGGAATGGGATACTCATCGTCGGATTCTTTCGACCATCATTCAATGCAATCCCGCCATTACTATGACTCGGGTGGTCTCAACTCAACCCCCAAAGTCTCCACCATAAGCACGGCCAAGACAGAGACATCATCAATGGACGCTTCTATCAGAAGTAGCTCATCCAGAGAGGCTGATCGCTCTGGGGATATATCAATCAGCAATGCGAGTGACCTTGACACTGAATGGGTTGAACAAGATGAACCTGGGGTTTACCTTACCATCAGAGCTTTGCCAGGTGGCAAAAGGGAGCTAAGACGAGTCAGATTCAGCCGAGAAAGATTTGGAGAGGTGCATGCTAGATTATGGTGGGAAGAGAACCGTGCCAGAATACATGAACAATACCTATGA	2214	0.4855	MKAANALGARTARACDSCLRRRARWFCAADDAFLCQGCDNLVHSANQLASRHERVRLHTASSELNSSVTPQAWHSGFTRKARTPRHNKHLLVKQERISKDEEEFFNTLLVVPDLGNNEEPVFDETEEQLLYRVPVFDPFDILETTMKPDVGDDVEETHDLDNFSEILPSDVDLAEFVADVENLLGSAGLNEDSGEMKGQELFDCKEDEDKRSMKVKDEQLEADTAFHLEPVLGITGQEEEEKLVVLVAANDSVSENKMFLRLNYEEVISAWDSQGCPWTTGNPPHFNSHDCLGSSGGDIGCYYGDVGSLRGGIVDGGREARVSRYREKRRTRLFAKKIRLLYSFGFSEFTLFQFREVDEFDYEAEMLTCIARPKKLGNESLSQPEESDSTNSNAAKNQATKSLTSQLKDMALKASGAYKHCNPCTGPPTQSRPRINTESDAESDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRVEPVVLFIEENEPKEWVAQVEPGVLITFVSLPSGGNDLKRIRFSREMFNKWQAQRWWAENYDRVMELYNVQRLNRQACPLPTPPRSEDESSKLESVEDSPVTPPLTRERLPRNLYRPTGMGMGYSSSDSFDHHSMQSRHYYDSGGLNSTPKVSTISTAKTETSSMDASIRSSSSREADRSGDISISNASDLDTEWVEQDEPGVYLTIRALPGGKRELRRVRFSRERFGEVHARLWWEENRARIHEQYL	737

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi01g1989	737	ProSiteProfiles	Zinc finger B-box type profile.	10	57	IPR000315	GO:0008270
	Glsi01g1989	737	MobiDBLite	consensus disorder prediction	567	607	-	-
	Glsi01g1989	737	MobiDBLite	consensus disorder prediction	420	464	-	-
	Glsi01g1989	737	MobiDBLite	consensus disorder prediction	630	660	-	-
	Glsi01g1989	737	Pfam	B-box zinc finger	12	55	IPR000315	GO:0008270
	Glsi01g1989	737	MobiDBLite	consensus disorder prediction	380	399	-	-
	Glsi01g1989	737	CDD	Bbox1_BBX-like	14	57	-	-
	Glsi01g1989	737	SMART	bboxneu5	10	57	IPR000315	GO:0008270
	Glsi01g1989	737	Pfam	Transcription factor BRX N-terminal domain	388	424	IPR027988	-
	Glsi01g1989	737	PANTHER	PROTEIN BREVIS RADIX-LIKE 1	366	737	IPR044532	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi01g1989	Glsi-ChrGlsi01	83248106	83255350	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi01g1989	365	737	Major Intrinsic Protein MIP	AT1G31880	44.216	4.48e-89	282

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Glsi01g1989		BRX	2.4e-27	No_clan

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