Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1989 ATGAAAGCTGCGAATGCATTGGGAGCCAGGACAGCACGAGCCTGCGATAGCTGCTTACGCAGAAGGGCACGTTGGTTTTGTGCAGCTGATGATGCTTTCCTCTGCCAAGGCTGCGATAATTTGGTTCACTCTGCAAATCAATTAGCCAGCAGACATGAAAGGGTTCGCCTTCACACTGCGTCCTCTGAGCTCAACTCCTCTGTGACCCCACAGGCATGGCACAGTGGATTCACACGAAAGGCAAGAACACCACGTCATAATAAGCACTTACTAGTGAAGCAGGAAAGAATTTCTAAAGATGAAGAAGAGTTTTTCAATACCCTTCTTGTTGTGCCCGACCTCGGAAATAATGAGGAACCTGTGTTCGATGAGACTGAGGAGCAGCTGCTTTATCGGGTGCCTGTGTTTGACCCTTTTGACATATTGGAAACCACCATGAAACCAGATGTTGGTGATGACGTTGAAGAAACACATGATTTGGACAATTTTTCTGAGATCCTTCCATCGGATGTGGATCTTGCTGAGTTTGTAGCTGATGTTGAAAACTTACTTGGAAGTGCAGGGCTCAATGAGGATTCCGGCGAAATGAAAGGACAAGAACTGTTTGATTGTAAAGAAGACGAAGACAAAAGATCAATGAAGGTTAAGGATGAACAACTTGAAGCTGATACAGCTTTCCATTTGGAGCCAGTTCTGGGCATTACAGGACAGGAAGAGGAGGAGAAGTTGGTCGTACTGGTGGCGGCAAATGATAGTGTCAGTGAGAACAAGATGTTTTTGAGGCTAAACTACGAGGAGGTCATTTCTGCTTGGGACAGCCAAGGTTGTCCGTGGACGACGGGAAATCCACCCCACTTCAACTCTCATGACTGCTTGGGTTCGAGTGGTGGAGATATTGGATGCTATTACGGGGATGTAGGAAGCTTAAGGGGAGGTATAGTTGATGGGGGAAGAGAAGCAAGAGTATCAAGGTACAGAGAGAAGAGAAGGACGCGTTTGTTTGCGAAGAAGATAAGATTGTTATACTCGTTTGGATTTTCAGAGTTCACTCTGTTTCAATTTCGAGAGGTTGACGAATTTGATTACGAAGCGGAAATGCTTACATGCATAGCTCGTCCTAAGAAACTCGGGAATGAGTCACTGAGTCAGCCCGAGGAATCCGATTCGACCAACTCAAACGCCGCCAAAAATCAAGCAACCAAATCCCTCACTTCTCAGCTCAAGGATATGGCCTTGAAAGCATCGGGAGCTTACAAGCATTGCAATCCCTGCACGGGACCACCGACTCAGAGTCGACCCAGGATCAACACTGAGTCAGACGCGGAGTCGGATCGGTTCCGATGGTCGTACAGGCGAACTGGGAGCTCAAGCTCGACAACGACAAGGACATGGGGGAAGGAGATGGAAGCGAGGCTGAAGGGGATTTCGAGCGGGGAGGGGACGCCGAACTCCGCCAGTGGACGGCGGGTGGAGCCGGTGGTGTTGTTCATCGAAGAGAATGAACCTAAAGAGTGGGTGGCGCAGGTGGAGCCCGGCGTTTTAATCACCTTTGTTTCACTTCCGAGTGGTGGGAATGATCTGAAGCGGATACGGTTCAGTCGGGAAATGTTTAACAAATGGCAAGCTCAAAGATGGTGGGCAGAGAACTATGACAGGGTCATGGAACTTTACAATGTTCAAAGGCTTAACCGCCAAGCTTGCCCTCTTCCAACACCGCCAAGATCTGAAGATGAGAGCTCAAAGCTTGAATCAGTAGAGGATAGCCCTGTAACACCTCCACTAACCAGAGAGCGGTTACCTCGTAACTTGTACCGCCCAACAGGGATGGGAATGGGATACTCATCGTCGGATTCTTTCGACCATCATTCAATGCAATCCCGCCATTACTATGACTCGGGTGGTCTCAACTCAACCCCCAAAGTCTCCACCATAAGCACGGCCAAGACAGAGACATCATCAATGGACGCTTCTATCAGAAGTAGCTCATCCAGAGAGGCTGATCGCTCTGGGGATATATCAATCAGCAATGCGAGTGACCTTGACACTGAATGGGTTGAACAAGATGAACCTGGGGTTTACCTTACCATCAGAGCTTTGCCAGGTGGCAAAAGGGAGCTAAGACGAGTCAGATTCAGCCGAGAAAGATTTGGAGAGGTGCATGCTAGATTATGGTGGGAAGAGAACCGTGCCAGAATACATGAACAATACCTATGA 2214 0.4855 MKAANALGARTARACDSCLRRRARWFCAADDAFLCQGCDNLVHSANQLASRHERVRLHTASSELNSSVTPQAWHSGFTRKARTPRHNKHLLVKQERISKDEEEFFNTLLVVPDLGNNEEPVFDETEEQLLYRVPVFDPFDILETTMKPDVGDDVEETHDLDNFSEILPSDVDLAEFVADVENLLGSAGLNEDSGEMKGQELFDCKEDEDKRSMKVKDEQLEADTAFHLEPVLGITGQEEEEKLVVLVAANDSVSENKMFLRLNYEEVISAWDSQGCPWTTGNPPHFNSHDCLGSSGGDIGCYYGDVGSLRGGIVDGGREARVSRYREKRRTRLFAKKIRLLYSFGFSEFTLFQFREVDEFDYEAEMLTCIARPKKLGNESLSQPEESDSTNSNAAKNQATKSLTSQLKDMALKASGAYKHCNPCTGPPTQSRPRINTESDAESDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRVEPVVLFIEENEPKEWVAQVEPGVLITFVSLPSGGNDLKRIRFSREMFNKWQAQRWWAENYDRVMELYNVQRLNRQACPLPTPPRSEDESSKLESVEDSPVTPPLTRERLPRNLYRPTGMGMGYSSSDSFDHHSMQSRHYYDSGGLNSTPKVSTISTAKTETSSMDASIRSSSSREADRSGDISISNASDLDTEWVEQDEPGVYLTIRALPGGKRELRRVRFSRERFGEVHARLWWEENRARIHEQYL 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1989 737 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Glsi01g1989 737 MobiDBLite consensus disorder prediction 567 607 - -
Glsi01g1989 737 MobiDBLite consensus disorder prediction 420 464 - -
Glsi01g1989 737 MobiDBLite consensus disorder prediction 630 660 - -
Glsi01g1989 737 Pfam B-box zinc finger 12 55 IPR000315 GO:0008270
Glsi01g1989 737 MobiDBLite consensus disorder prediction 380 399 - -
Glsi01g1989 737 CDD Bbox1_BBX-like 14 57 - -
Glsi01g1989 737 SMART bboxneu5 10 57 IPR000315 GO:0008270
Glsi01g1989 737 Pfam Transcription factor BRX N-terminal domain 388 424 IPR027988 -
Glsi01g1989 737 PANTHER PROTEIN BREVIS RADIX-LIKE 1 366 737 IPR044532 -
Glsi01g1989 737 ProSiteProfiles BRX domain profile. 682 737 IPR013591 -
Glsi01g1989 737 ProSiteProfiles BRX domain profile. 503 558 IPR013591 -
Glsi01g1989 737 MobiDBLite consensus disorder prediction 630 674 - -
Glsi01g1989 737 MobiDBLite consensus disorder prediction 378 399 - -
Glsi01g1989 737 Pfam Transcription factor regulating root and shoot growth via Pin3 682 736 IPR013591 -
Glsi01g1989 737 Pfam Transcription factor regulating root and shoot growth via Pin3 503 557 IPR013591 -
Glsi01g1989 737 MobiDBLite consensus disorder prediction 450 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1989 Glsi-ChrGlsi01 83248106 83255350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1989 365 737 Major Intrinsic Protein MIP AT1G31880 44.216 4.48e-89 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi01g1989 BRX 2.4e-27 No_clan