Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1985 ATGCCAGGCTTACCCAGACAACTTCTGAGACAAGGAACAGATTGTAAGAAAGGAAAAGTAAAAGTTCCAACCAAAAAAGAAAAATTGAATTCCATGAGAAAAATTCGACTTTTATACACTGACCCAGATGCTACAGATTATTCAAGCGATGAAGATGGTGAGCTTTGGAGCAATGGCTATCAATTGGATGGTTCTAAGCGATTTGTTAAAGAAATTTTGGTTCCAGCAAATTCTTCAGAACAAAATTTCAGTCATGAACAAATCATTATGCGTCCCAACCATGTTTCCAGCAGCAGGAGAAATAGGAAATCATCAAGCTTGCATAAAGGGGTTCGACGTCGGAAATGGAGAACCCACGTGGCAGAAATCTTAGACCCATTTCGAGGAGTCAGAGTATGGCTTGGAACTTACAATACTGAAGAAAAGGCTGCTATGGTTCATGAGAAAAGGGAGGAGGAATTTGAAAGCTTAGAGTTAGCTTTGAGAAGAAGAGATACCAAAGATTTTTATTCCCATCTATCGCCATCTTCTGTGCTTGATGTCACTGCTACTAAAGCTTCCATAGGAGAAAAGGTCAATACGGAAACAACCAGTGAAGAAGGTAATGTTGAGGAAGCATTTTCTGAAGAAGGTCAGTTAATAAAGCATTTATTAGAGGAGCCAATAATGCCATCGTTGGCTGGTCAAGATCTCAGTTTGGACGGGATGGAGAATAGAGCAATGCTGTTCGGTGACGATTCTGATAATTTCTTCAACAACGAAATTGATGGAGGTTCTAGCTGGGATATAGACGATGGTGAAGGCATCAGTGTTTCCCCTGTTGACTGTGATTTTAGTGATCCAGAGTTAGCTTGGATTGATGAAACCCTGAATGGTGAATGGCCTTAG 888 0.4054 MPGLPRQLLRQGTDCKKGKVKVPTKKEKLNSMRKIRLLYTDPDATDYSSDEDGELWSNGYQLDGSKRFVKEILVPANSSEQNFSHEQIIMRPNHVSSSRRNRKSSSLHKGVRRRKWRTHVAEILDPFRGVRVWLGTYNTEEKAAMVHEKREEEFESLELALRRRDTKDFYSHLSPSSVLDVTATKASIGEKVNTETTSEEGNVEEAFSEEGQLIKHLLEEPIMPSLAGQDLSLDGMENRAMLFGDDSDNFFNNEIDGGSSWDIDDGEGISVSPVDCDFSDPELAWIDETLNGEWP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1985 295 Pfam AP2 domain 108 148 IPR001471 GO:0003700|GO:0006355
Glsi01g1985 295 SUPERFAMILY DNA-binding domain 106 151 IPR016177 GO:0003677
Glsi01g1985 295 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Glsi01g1985 295 SMART rav1_2 107 153 IPR001471 GO:0003700|GO:0006355
Glsi01g1985 295 MobiDBLite consensus disorder prediction 96 111 - -
Glsi01g1985 295 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 177 - -
Glsi01g1985 295 MobiDBLite consensus disorder prediction 83 111 - -
Glsi01g1985 295 CDD AP2 108 147 IPR001471 GO:0003700|GO:0006355
Glsi01g1985 295 Gene3D AP2/ERF domain 108 156 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1985 Glsi-ChrGlsi01 83224506 83225393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1985 66 225 AP2-EREBP Transcription Factor Family AT1G49120 36.095 4.63e-18 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi01g1985 AP2 2.6e-05 CL0081