Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1962 ATGGCAAACAACTCAACTGGGCAGCTCGGGGGTTCAGAGATTCATGGATTCCATACATTACAAGAGTTGGATGTTAGGAACATCATGGAGGAAGCAAGAAGCAGATGGCTTCGTCCCAATGAGATTCATGCCATACTCTGCGGTACTATTGTGTTATTTGACCGGAAGATGCTTAGGAATTTTCGTAAAGATGGGCACAATTGGAAAAAGAAAAAGGATGGGAAAACTGTTAAAGAAGCACATGAGCACTTAAAAGTTGGCAACGAAGAAAGGATTCATGTATATTATGCACATGGCCAAGAAAACCCAAGTTTTGTTCGCAGATGTTATTGGCTGCTTGATAAGAGTCTGGAACACATAGTCCTTGTTCATTACCGTGAAACACAGGAGTTGCAAGGTTCTCCGGTCACATCTGCATATTCAAATTCTAGTTGTGTCTCTGATCCAACCACACCATGGTTTTTATCAGAAGAATTAGATTCTGGGACCAACAAGCCTTATGCTGGTGCAGAGCTTAATGACAATTTAACAGTCAAAAGTCATGAACTGAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTGCAAATGATCTTAACACCTCTACTACTACTAATGGAGGCAAAATTCCACATTTTGGTCAAGAAAACCAAATTTCATTGAATGGAACTTCGAGTAATGTAGCCAACAATCCATCTTCAGAAATTCCTTTTGAAAATTTAAGCAATCCTATAGCTGGGAGCAATAGTGCTCCTTACAATTTCCCTGAAAGTTTGAATCTTCAGACAATGAACAGTCAAGTAAATTCAAATGTGCAGAGGGGACATCCTATCACTGTGGGTGGTGTTGATTCCTTGGACACTTTTGTCAATGATAATCTGCATAGCCAGGACAGCTTTGGAAGGTGGATAAACAACATCATGTCTGATTCACCATGTTCTGCAGATGAGTCAGGACTTGAATCTTCGGTTTCATCTGTTCATGAATCTTATTCTTCTCTGGTAGAGGATCATCATCGACCTTGTCTTTCAGAACAAGTATTTAACATCACTGACGTGTCTCCTGCCTGGGCGTCTTCCACTGAGAAAACAAAGATCCTGGTCACTGGATTTTTCCACGATGACTATCTGCAACTTGCAAAGTCTGATCTGTTTTGTGTCTGTGGGGATGCAAGTGTTCGTGCAGAAATTGTTCAAGTTGGTGTCTACCGATGCTGGGTATCACCACATTCCCCTGGATTTGTGAATCTCTATATGAGCTTTGGTGACCATAAGCCCATTAGCCAAGTTGTTAATTTTGAGTATCACCCTACCGTTTTGCATGACCCTGTGGCTTCTGTGGAAGAGAGGGACAACTGGGACGAGTTTCAACTTCAAATGAGGCTTGCTTATTTGCTTTTTGCTACACAAAAGAGCTTTGACATTCTCTCTTGCAAAGTATCGCCTAATGCACTGAAGGAGGCTAAGAAATTTGCCTTAAATACCTCATATATCTCCAAAATTTGGCAATACTTGATTAAGTCACCTGAAGAATATAAAACTCTGTTGCCACAATCAAAAGATGTCTTGTTCGAAATAGCATTAAAAACCCGACTAAAGGAATGGCTGTTGGAAAGAATTATCTTAGGTTGTACGACTACTGAATATGATGCCCAAGGTCAAGGTGTAATCCATTTGTGTTCAATTTTGGGATATACATGGGCTGTTTCCTTATTTTCATGGTCAGGTTTTTCACTGAATTTCCGTGATAAATTTGGATGGACAGCTCTGCATTGGGCAGCATATTATGGAAGGGAGAAAATGGTTGCAACTCTATTGTCAGCAGGGGCAAAGCCAAATTTGGTCACAGATCCTACTCCACAAAATCCTGGTGGACGTACTGCTGCTGATCTTGCTTCTATGAAGGGTTATGATGGCTTAGCAGCTTATCTTTCCGAGAAGTCTCTAGTTCAGCAGTTCAGTGATATGCGCTTAGCTGGAAATATCAGTGGCTCACTGGACACTGGCACAACTGATCCAGTACATTCTGAGAACCTCACTGAGGACCAGCTATATTTGAAGGATACATTAGCAGCTTACCGAACAGTTGCTGATGCAGCAGCACGCATACAATCTGCATTTAGGGAGCACTCATTAAAATTACGAACTGAGGCAGTTCAGCTTTTCAGTCCAGAGGCTGAAGCACGCCAAATAGTTGCAGCAATGAAGATTCAACATGCCTTCCGAAACTTTGAGACAAGGAAGGTGATGGCAGCTGCTGCTCGCATTCAGTATACCTTCCGTATGTGGAAGACGCGTAAAGAATTTCTCAACATGCGTCGTCAGGCAATCAAAATTCAGTCTGTTTTCCGGGCCTTCCAAGTGCGGAGGCAGTATCGTAAACTTCTGTGGGGAGTTGGAGTGCTTGAGAAAGCAATCTTGCGATGGCGCTTAAAGAGACGAGGCTTCCGTGGGCTCTGTATCAACCCTGTCCAAGAAGTGGTAGATCAGAACCAGGATTCACAGAGTGATCCGGAGGAGGACTTTTTCCGGACTGGCAGGAAACAAGCTGAAGAACATGTTGAGAGAGCTGTAGTGCGTGTTCAGGCCATGTTCCGCTCTAAGAAAGCTCAAGTAGATTATAGGAGGATGAAGCTAGCTCATAATCAAGCAAAGCTGGAACTAGAAAATGAAGAGCTCCTCAATTCTGAGGTTGATATGGGAGTGAAGACATAG 2724 0.4258 MANNSTGQLGGSEIHGFHTLQELDVRNIMEEARSRWLRPNEIHAILCGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQENPSFVRRCYWLLDKSLEHIVLVHYRETQELQGSPVTSAYSNSSCVSDPTTPWFLSEELDSGTNKPYAGAELNDNLTVKSHELRLHEINTLEWDDLVVANDLNTSTTTNGGKIPHFGQENQISLNGTSSNVANNPSSEIPFENLSNPIAGSNSAPYNFPESLNLQTMNSQVNSNVQRGHPITVGGVDSLDTFVNDNLHSQDSFGRWINNIMSDSPCSADESGLESSVSSVHESYSSLVEDHHRPCLSEQVFNITDVSPAWASSTEKTKILVTGFFHDDYLQLAKSDLFCVCGDASVRAEIVQVGVYRCWVSPHSPGFVNLYMSFGDHKPISQVVNFEYHPTVLHDPVASVEERDNWDEFQLQMRLAYLLFATQKSFDILSCKVSPNALKEAKKFALNTSYISKIWQYLIKSPEEYKTLLPQSKDVLFEIALKTRLKEWLLERIILGCTTTEYDAQGQGVIHLCSILGYTWAVSLFSWSGFSLNFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTPQNPGGRTAADLASMKGYDGLAAYLSEKSLVQQFSDMRLAGNISGSLDTGTTDPVHSENLTEDQLYLKDTLAAYRTVADAAARIQSAFREHSLKLRTEAVQLFSPEAEARQIVAAMKIQHAFRNFETRKVMAAAARIQYTFRMWKTRKEFLNMRRQAIKIQSVFRAFQVRRQYRKLLWGVGVLEKAILRWRLKRRGFRGLCINPVQEVVDQNQDSQSDPEEDFFRTGRKQAEEHVERAVVRVQAMFRSKKAQVDYRRMKLAHNQAKLELENEELLNSEVDMGVKT 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1962 907 Gene3D - 751 799 - -
Glsi01g1962 907 Gene3D Immunoglobulins 346 442 IPR013783 -
Glsi01g1962 907 ProSiteProfiles Ankyrin repeat profile. 588 620 IPR002110 GO:0005515
Glsi01g1962 907 Pfam Ankyrin repeats (3 copies) 561 650 IPR002110 GO:0005515
Glsi01g1962 907 Pfam CG-1 domain 48 127 IPR005559 GO:0003677
Glsi01g1962 907 SUPERFAMILY E set domains 352 438 IPR014756 -
Glsi01g1962 907 ProSiteProfiles IQ motif profile. 753 781 IPR000048 GO:0005515
Glsi01g1962 907 FunFam calmodulin-binding transcription activator 5 518 658 - -
Glsi01g1962 907 ProSiteProfiles CG-1 DNA-binding domain profile. 25 134 IPR005559 GO:0003677
Glsi01g1962 907 SMART iq_5 774 796 IPR000048 GO:0005515
Glsi01g1962 907 SMART iq_5 856 878 IPR000048 GO:0005515
Glsi01g1962 907 SMART iq_5 751 773 IPR000048 GO:0005515
Glsi01g1962 907 ProSiteProfiles IQ motif profile. 858 886 IPR000048 GO:0005515
Glsi01g1962 907 ProSiteProfiles Ankyrin repeat region circular profile. 588 616 - -
Glsi01g1962 907 SUPERFAMILY Ankyrin repeat 538 651 IPR036770 -
Glsi01g1962 907 ProSiteProfiles IQ motif profile. 775 799 IPR000048 GO:0005515
Glsi01g1962 907 SMART ANK_2a 627 656 IPR002110 GO:0005515
Glsi01g1962 907 SMART ANK_2a 588 617 IPR002110 GO:0005515
Glsi01g1962 907 Gene3D - 524 657 IPR036770 -
Glsi01g1962 907 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 887 - -
Glsi01g1962 907 Pfam IQ calmodulin-binding motif 754 772 IPR000048 GO:0005515
Glsi01g1962 907 Pfam IQ calmodulin-binding motif 777 796 IPR000048 GO:0005515
Glsi01g1962 907 SMART CG_1_2 28 129 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1962 Glsi-ChrGlsi01 82988978 82997841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1962 28 890 CAMTA Transcription Factor Family AT3G16940 52.429 0.0 881
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Glsi01g1962 Ank_2 3.3e-07 CL0465