Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1954 ATGGTGCCACAACAACTTGTCAGTGAGTTGTTGAGAAGAATGGGAAGAGCACCTTGCTGTGAGAAAATGGGGTTGAAGAAAGGAAGATGGACAGCAGAAGAGGATAAGATCTTGACCCAATACATCCAACAAAATGGTGAAGGTTCATGGAGGTGGTCTGTTATAGCAGGGCATTTACCAGGACGTACTGATAATGAGATAAAGAACTACTCGAACTCTCATTTAAGGAGACAAATTTACTGCTTCATGAGATCTTTAAATAAGTCCCTACCACCCATTGACATTGCTGCTGTAAATGTACCTGCTACCTCCAAGCGAAGAGGGGATCGAGGGATCAGACCAAGTCAACCACCCATTAATAAAGAGGACAACAAGAACATGGCTTTGAGCCAAAACTCCTACTTGCAGGGGAACGGAGGCAAGGAGCTTGAACAAATGCTTAAACCAAAAGCAACCCTACAAAGTTGA 468 0.4359 MVPQQLVSELLRRMGRAPCCEKMGLKKGRWTAEEDKILTQYIQQNGEGSWRWSVIAGHLPGRTDNEIKNYSNSHLRRQIYCFMRSLNKSLPPIDIAAVNVPATSKRRGDRGIRPSQPPINKEDNKNMALSQNSYLQGNGGKELEQMLKPKATLQS 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1954 155 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 14 51 - -
Glsi01g1954 155 ProSiteProfiles Myb-like domain profile. 22 75 IPR001005 -
Glsi01g1954 155 SUPERFAMILY Homeodomain-like 15 79 IPR009057 -
Glsi01g1954 155 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Glsi01g1954 155 CDD SANT 29 75 IPR001005 -
Glsi01g1954 155 MobiDBLite consensus disorder prediction 119 139 - -
Glsi01g1954 155 Gene3D - 24 80 - -
Glsi01g1954 155 SMART sant 26 77 IPR001005 -
Glsi01g1954 155 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 79 IPR017930 -
Glsi01g1954 155 MobiDBLite consensus disorder prediction 101 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1954 Glsi-ChrGlsi01 82918336 82919876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1954 14 82 MYB Transcription Factor Family AT5G49330 48.739 2.69e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi01g1954 Myb_DNA-binding 2.1e-12 CL0123