Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1951 ATGAGTGCATCAGAAAACCCTAACCTTCGTAATAATAAGTCAGAGAGGGAACCTTCCCCGTCAGACTTGATGCTATTTGGTGTCCCATTAAGGGCTGGTTGCAATGAAATGGAGGTTAAGAGATTCAAATGCCCTTTCTGTGATCGGAAATTCACCAATTCTCAAGCATTGGGAGGTCACCAAAATGCCCATAGGAGAGAACGCCACCAGGCTACCCTAAGCTATTTCAATTACCTTCCCCTTCGTTCTCATCATCAACGGTTTACAGCAGTTTCCCCAGCCCCTTTCATGCCAGCACATGGATCAAGTCCGTCCTTTCATCCAAGGGCATCTCTGCCTGAGCCGTATGCATATGGTGTTGGATCCAACGAGAGAGAGGCACATAATGAGCTTCCTGTGCAGGCGATCCCAGCTGGTATAGAACAACTACAGAACGATGATGATGACGTTGATCTTAACTTGACTCTAGCTAGCACACCATCCTCAAGTCCTCCAATTTAA 501 0.4671 MSASENPNLRNNKSEREPSPSDLMLFGVPLRAGCNEMEVKRFKCPFCDRKFTNSQALGGHQNAHRRERHQATLSYFNYLPLRSHHQRFTAVSPAPFMPAHGSSPSFHPRASLPEPYAYGVGSNEREAHNELPVQAIPAGIEQLQNDDDDVDLNLTLASTPSSSPPI 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1951 166 Gene3D Classic Zinc Finger 30 88 - -
Glsi01g1951 166 PANTHER ZINC FINGER PROTEIN 5 28 109 IPR044299 GO:0010090
Glsi01g1951 166 MobiDBLite consensus disorder prediction 1 23 - -
Glsi01g1951 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Glsi01g1951 166 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Glsi01g1951 166 SUPERFAMILY beta-beta-alpha zinc fingers 40 69 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1951 Glsi-ChrGlsi01 82899597 82900097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1951 42 113 C2H2 Transcription Factor Family AT1G80730 44.444 8.14e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi01g1951 None None None