Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1949 ATGGTCGATCTGAGTGGAAAAGGATCGGAGGCTGAGGACGCCAATAACAGAAACCCAAACGGGGATTCGTCGGAAGAGAGTCCAATGAACGAGCAGAAGAAAACCTGCGCCGATTGTGGCACAACCAAGACCCCTCTCTGGAGGGGTGGTCCAGCTGGGCCTAAGTCCCTATGCAACGCTTGTGGGATCAGAAGCAGGAAGAAGAAAAGAGCAATTTTGGGTTTAAACAAAGGAAGCAATGAAGAGAAAAAGGGCAAAAGAAGCAATAGTAGTGGGAGCAATAAGCTGGGGGATAGTTTGAAGCAGAGACTAATGGCTCTGGGGAGGGAGGTTTTGATGCAGAGATCAACAGTTGAGAGACAGAGGAAGAAGCTTGGGGAGGAAGAACAAGCAGCAGTTCTGTTAATGGCGCTTTCTTATGGGTCTGTGTATGGTTGA 438 0.4886 MVDLSGKGSEAEDANNRNPNGDSSEESPMNEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGLNKGSNEEKKGKRSNSSGSNKLGDSLKQRLMALGREVLMQRSTVERQRKKLGEEEQAAVLLMALSYGSVYG 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1949 145 CDD ZnF_GATA 35 87 IPR000679 GO:0006355|GO:0043565
Glsi01g1949 145 Gene3D - 30 96 IPR013088 GO:0006355|GO:0008270
Glsi01g1949 145 MobiDBLite consensus disorder prediction 1 59 - -
Glsi01g1949 145 MobiDBLite consensus disorder prediction 11 26 - -
Glsi01g1949 145 ProSiteProfiles GATA-type zinc finger domain profile. 30 66 IPR000679 GO:0006355|GO:0043565
Glsi01g1949 145 ProSitePatterns GATA-type zinc finger domain. 36 61 IPR000679 GO:0006355|GO:0043565
Glsi01g1949 145 SMART GATA_3 30 80 IPR000679 GO:0006355|GO:0043565
Glsi01g1949 145 MobiDBLite consensus disorder prediction 74 89 - -
Glsi01g1949 145 PANTHER OS01G0976800 PROTEIN 6 144 - -
Glsi01g1949 145 MobiDBLite consensus disorder prediction 71 99 - -
Glsi01g1949 145 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 31 70 - -
Glsi01g1949 145 Pfam GATA zinc finger 36 70 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1949 Glsi-ChrGlsi01 82886974 82887636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1949 1 144 C2C2-Gata Transcription Factor Family AT5G49300 60.000 8.02e-51 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi01g1949 GATA 6.5e-17 CL0167