Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1945 ATGCGCAGCTCCAACTCTCCCATCGTGCAGATAGTTCTTGTTGCTACCCGGTTTTCGCTGTTGCTGGCTACTTTCTTTTTTGCTATTGCTACACCGATCAGTATCCTTCTCTTCTGGTGCTGCTCACTGGTGGCTCATCGTGCAGCTCCAACTCTCTCATCGTTCTCTTCTGGTGCTGCTCACTGCCTCTCGTTCACTATGCAAATTACTTCTATTTATGATCAATTGATGAATTTTGACTTGAGAATGGGATCTGTACTTCTGTTCTTCTCTGGGTTTTGTTCTGTCCCGTGCGCACGTATGCTAGGAGTGGGGCCCAAGGGCTTTTCCAGAGATGAGGTGCCGTGGCCCCCAGTCCAGAACTCCCTCCCTTCCGCGTTGGCCCACTTGTTCGGCCCTTTGTACTACGTGGAAAATGATAGAGCAGAGCGACTTCAGCCAAGGAGACCTTATCCGATGGAAGACACGTGGCAGCCGGGGTTGGTGTTCGTTGAATTTGGAACTCAGCTGCATAAGCTTCGCAATTTCCCACTCTTACGCCATATTTTCAACTATGTGAAATCCGTCTTTTCTGTTCTTCTGTTTCATGCTTTCTCAGTGTTTGTTGTTGTGCTGCTATTTCGATCTTTGAAGATGAATCTGAGCAACGGCAAGGGATCCATGTCAACGGCTAGTTCCAGTGCGGCTTTGAAATCCGGCGACATCGTCCCCGAGCAGTTTCCGGCGGGTCTGCGGGTACTGGTAGTGGACGATGATCCCACATGTCTCATGATCCTGGAGAAGATGCTTCGCACTTGCCTCTACGAAGTCACGAAATGCAATCGAGCAGAGATTGCATTGTCACTTCTGAGAGAGAAGAAAAATGGGTTCGACATTGTTATAAGCGATGTACATATGCCAGACATGGATGGCTTTAAGCTCTTAGAGCACATTGGGTTGGAGATGGATCTTCCAGTTATTATGATGTCGGCAGATGATGGAAAAAGTGTTGTTATGAAGGGTGTGACACATGGTGCTTGTGATTACCTTATAAAACCTGTGCGCATTGAGGCTTTGAAGAATATATGGCAGCATGTGATCCGGAAAAGAAAGAACGAGTGGAAGGATTTGGAGCAATCAGGTAGTGCAGAAGAAGGAGATCGGCAACAAAAGCCAACTGATGATGCAGATTACTCATCCTCTGCAAATGAAGGCAATTGGAGAAATGCAAAGAAGAGAAGGGACGAGGAGGAAGAAGTAGATGAGAGGGATGACACATCCACCTTGAAGAAGCCGCGGGTTGTTTGGTCAGTTGAGCTCCATCAACAATTTGTTGGAGCTGTGAATCAACTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTAATGAATGTTCCTGGGCTAACTAGAGAAAACGTTGCTAGCCACCTCCAGAAATATCGTTTGTATCTTCGAAGGCTAAGTGGAGTTTCTCAACACCAGGGTAACTTAAGCAACTCTTTCATGAGCTCACAAGAGGCAACTTTTGGGACGATTTCTTCACTTAATGGAATTGATCTCCAAGCTCTTGCAGCTGCGGGCCATCCAGCACAAAGCTTAGCAACGCTTCAAGCAGCAGGACTTGGTAGATCAACTGCAAAAGCTGGCATACCCATGCCCCTTGTTGATCAAAGGAACGTTTTCAGTTTTGAAAACCCAAGATTAAGATATGGAGAAGGGCAACAGCAACATGTGAGCGGCAGTAAGCCAATGAACTTACTTCACGGAATCCCTACCAACATGGAGCCAAAGCAGCTTGCTAATTTGCACCAATCTACTCCATCCCTTGGCAGTTTGAACATGCGAGTCAATGCTTCTGCTGCACCAAGCAACCCCTTATTGATGCAGATGTCTCAATCGCAACCAAGAGGTCAGATGCTAAGTGAAAATGCCATTTCTCATGTTCCCAGACTTCCAACATCTCTAGGGCAGTCTACTATACCAAATGGAACCCCCAGTGGTGTTCTGGCGAGAAATGGGATGGCTGATAGTAACAGAGGAGCTGCATATAATTCGGTTCCACAAACCTCTTCAATGTTGAATTTTCCCATGAACCAGACCCCAGAAATGTCCGCAAGTAGTTTTCCTCTGGGAAGCACTCCAGGTATATCCAGTATCACACCAAAAGGCACATATCAAGATGGAGTTGCTTCAGGAATTAAAGGATCGTCTGGATTTGTTCCAAGTTATGATATCTTTAATGAACTGCACCAGCAGAAGTCCCATGATTGGGAGGTGCAAAACTTGGGCCTGACGTATGATGCCTCTCAGCATGCAAATCCTTTACAAGGTAACGTCAATGTCTCACCATCAGTTTTAGTCCATCAGGGCTTCTCTTCTACCCAACAGACTGGACAGAACAGAGATTCTACTTCAATTGGAAAAGCCATGTTCTCCCTAGGGGAAAGCATGGAACCAGGTAATTTCCAAAATATTGGTCAACGCTTCAATACCTTTGTTGCTGAAAATTCTGTAAGAGTTAAGGCTGAAAGAGTCCCCGATGCAAGCTCTCAGACTAACCTCTTCCCTGAGCATTATGGGCAGGAGGATCTTATGAGTGCACTTCTTAAACAGCAAGAAGGCATTGGAGCAGCTGAGAATGAGTTTGACTTTGATGGATATTCCATGGACAACATTCCTGTCTAG 2670 0.4596 MRSSNSPIVQIVLVATRFSLLLATFFFAIATPISILLFWCCSLVAHRAAPTLSSFSSGAAHCLSFTMQITSIYDQLMNFDLRMGSVLLFFSGFCSVPCARMLGVGPKGFSRDEVPWPPVQNSLPSALAHLFGPLYYVENDRAERLQPRRPYPMEDTWQPGLVFVEFGTQLHKLRNFPLLRHIFNYVKSVFSVLLFHAFSVFVVVLLFRSLKMNLSNGKGSMSTASSSAALKSGDIVPEQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEIALSLLREKKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKRKNEWKDLEQSGSAEEGDRQQKPTDDADYSSSANEGNWRNAKKRRDEEEEVDERDDTSTLKKPRVVWSVELHQQFVGAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQGNLSNSFMSSQEATFGTISSLNGIDLQALAAAGHPAQSLATLQAAGLGRSTAKAGIPMPLVDQRNVFSFENPRLRYGEGQQQHVSGSKPMNLLHGIPTNMEPKQLANLHQSTPSLGSLNMRVNASAAPSNPLLMQMSQSQPRGQMLSENAISHVPRLPTSLGQSTIPNGTPSGVLARNGMADSNRGAAYNSVPQTSSMLNFPMNQTPEMSASSFPLGSTPGISSITPKGTYQDGVASGIKGSSGFVPSYDIFNELHQQKSHDWEVQNLGLTYDASQHANPLQGNVNVSPSVLVHQGFSSTQQTGQNRDSTSIGKAMFSLGESMEPGNFQNIGQRFNTFVAENSVRVKAERVPDASSQTNLFPEHYGQEDLMSALLKQQEGIGAAENEFDFDGYSMDNIPV 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1945 889 SUPERFAMILY CheY-like 243 368 IPR011006 -
Glsi01g1945 889 SMART REC_2 244 356 IPR001789 GO:0000160
Glsi01g1945 889 Gene3D - 244 380 - -
Glsi01g1945 889 NCBIfam myb-like DNA-binding domain, SHAQKYF class 424 477 IPR006447 GO:0003677
Glsi01g1945 889 Pfam Myb-like DNA-binding domain 426 476 IPR001005 -
Glsi01g1945 889 MobiDBLite consensus disorder prediction 370 420 - -
Glsi01g1945 889 Pfam Response regulator receiver domain 246 354 IPR001789 GO:0000160
Glsi01g1945 889 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 423 480 IPR017930 -
Glsi01g1945 889 CDD REC_typeB_ARR-like 246 360 - -
Glsi01g1945 889 PANTHER TWO-COMPONENT RESPONSE REGULATOR 244 569 IPR045279 GO:0009736
Glsi01g1945 889 MobiDBLite consensus disorder prediction 370 387 - -
Glsi01g1945 889 Gene3D - 421 483 - -
Glsi01g1945 889 FunFam Two-component response regulator 420 483 - -
Glsi01g1945 889 SUPERFAMILY Homeodomain-like 421 481 IPR009057 -
Glsi01g1945 889 ProSiteProfiles Response regulatory domain profile. 245 360 IPR001789 GO:0000160
Glsi01g1945 889 MobiDBLite consensus disorder prediction 400 420 - -
Glsi01g1945 889 FunFam Two-component response regulator 244 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1945 Glsi-ChrGlsi01 82849891 82863053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1945 278 889 Response Regulator Gene Family AT3G16857 50.077 2.37e-179 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Glsi01g1945 Response_reg 1.3e-22 CL0304