Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1936 ATGGGTTCAACAAATATCAGGGACATTTTGACAGCGTTTAGTCCTTCTTTAGACTTGTTTGCTATCAGCACTGGAGATGGTCGCGTAAAGATATGGGATACACTAAAGGGTCAGGTCCAGACTGAGTTTGCAGACATCACATCAACTGATGCAACAAGTATATATGCTAGATCCATGAAGGGGCATCTTTCAATAGATTATACATGCATGAAGTGGTTGTCATTGGAAAGAAAGAGAAAAAGGAAACATGCATCCTCATTATTAGTACTTGGAACAGGTAGTGGTGATATTTTAGCACTTGATGTGTCTGCTGGTCAATTGAATTGGAGAATTAGTGACTGCCATCCTGGAGGCGTGAGAGCCATTTCATCTTCTGCAAACGCATCGTGTATTTATACTGCAGGTGCAGATGGGATGATATGCAGGATTGATTGCATGACAGGTAACCTGTTGGAGAAATTCAAAGCTTTAACGAAGGCAATATCCTGTATGTCTGTTTCCTCAGATGGGAAGACATTAGCTACTGCAGCTGCGCAATTAAAGATTTTTAGTTGTTCTGATAACAAAAAGATGCAAAAGTTCTCTGGTCATCCTGGATCCGTACGGTGTATGGTCTTCACTGAAGATGGAAAGTATATTCTATCCTCTGCAGTTGGCGAAAGATATGTTGCCCTGTGGAGGATAGATGGAGCCAAAAAGAAGTCGGTTAGTTGTGTTCTTGCAATGGAGCACCCTGCTGTGTTTCTTGATAGCAGGGGACTTGATGAGGCTGGTATATGTGTTTTGGCTATCTCAGAAGTTGGCAATTGTTATTTTTGGATTGGAAATAATGTTGAGGAACTACGTAATGCAAAGCCCACTAAAATATCATTGTCTTTGGAAGACATGTCCTCCAGAAATAACAAGAGGGCATTGCCAGCAATATATGCTGCAAAATTACAAGGCGTTCACAAGCCTGCCTCTGGCCAGGTTTTCCTTGTTTATGGGTTGCTTGTAAAACCATCATTTCAAAAAATTCTAGTGCATTCTGGCTCAGACATGAAATTGAATGTCTCCAATGATGGTATTCTTCTTCCAGTTAATAAGTCTCTCAAAAAGTCTAAGAAGGGGATAGATGTTAAAAAAGTTACTGCACTAGACAGTGCTAATGCAGAGGATGCCTTACTCCCAATTCCTAAGATTTTTGATTCTCATGAGAAAGAGAAAGCATTTCTAGACTCTTTGGACAGGGAGAGAAGTAGTAAACCTGATTCTCTTGATGTTGAAGATGAGACGGCCCAAGTTGAGGTTGATGTAATTTGCATGGAGGACAGGATGAGATCACTTGGGTTACTTGATGGTGAAAATGATTTTGAATCAAAAATAAAATTTTGTTCTACATTGTTGAAGGGTGTTGATCTTGAAGCTACACTTCCAAAGAAAAAGATAAGAGCAGCTGTCTTGTCTATGGGGCCAAGTGACGCATACAAGCTACTGGAAGTGCTGCTGGCTGCATGGAAATCAAGGTCATCTATTGGAAAGTATGCTCTTCCGTGGATATATAGCATATTAGTGAATCATGGTCACTTTGTCATTTCTCAAGAACACGTGACACATATGCTTGATTCCTTATGCAAGATTACTAATTCTAGAGGGTCTGCTCTTCAGACTTTGTTACAATTATCAGGCCGTCTGCAACTGGTGACAACACAGATTAACAAGGCTTCTCAAAACATAAGTCATTCAGTACATGATCTTCAAGAAAGTGAAGATGAGGATGTAGAGGATGAGTATTTTCATGAGGAAGTAGATGATGCATCTGAAATAAGTAGTGATGAGGAAAGCTAG 1827 0.4012 MGSTNIRDILTAFSPSLDLFAISTGDGRVKIWDTLKGQVQTEFADITSTDATSIYARSMKGHLSIDYTCMKWLSLERKRKRKHASSLLVLGTGSGDILALDVSAGQLNWRISDCHPGGVRAISSSANASCIYTAGADGMICRIDCMTGNLLEKFKALTKAISCMSVSSDGKTLATAAAQLKIFSCSDNKKMQKFSGHPGSVRCMVFTEDGKYILSSAVGERYVALWRIDGAKKKSVSCVLAMEHPAVFLDSRGLDEAGICVLAISEVGNCYFWIGNNVEELRNAKPTKISLSLEDMSSRNNKRALPAIYAAKLQGVHKPASGQVFLVYGLLVKPSFQKILVHSGSDMKLNVSNDGILLPVNKSLKKSKKGIDVKKVTALDSANAEDALLPIPKIFDSHEKEKAFLDSLDRERSSKPDSLDVEDETAQVEVDVICMEDRMRSLGLLDGENDFESKIKFCSTLLKGVDLEATLPKKKIRAAVLSMGPSDAYKLLEVLLAAWKSRSSIGKYALPWIYSILVNHGHFVISQEHVTHMLDSLCKITNSRGSALQTLLQLSGRLQLVTTQINKASQNISHSVHDLQESEDEDVEDEYFHEEVDDASEISSDEES 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1936 608 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 236 IPR001680 GO:0005515
Glsi01g1936 608 MobiDBLite consensus disorder prediction 582 608 - -
Glsi01g1936 608 Pfam WD domain, G-beta repeat 189 226 IPR001680 GO:0005515
Glsi01g1936 608 Pfam WD domain, G-beta repeat 10 33 IPR001680 GO:0005515
Glsi01g1936 608 SMART WD40_4 187 227 IPR001680 GO:0005515
Glsi01g1936 608 SMART WD40_4 2 33 IPR001680 GO:0005515
Glsi01g1936 608 SMART WD40_4 104 144 IPR001680 GO:0005515
Glsi01g1936 608 SMART WD40_4 147 184 IPR001680 GO:0005515
Glsi01g1936 608 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 42 IPR001680 GO:0005515
Glsi01g1936 608 MobiDBLite consensus disorder prediction 572 608 - -
Glsi01g1936 608 Pfam Dip2/Utp12 Family 471 562 IPR007148 -
Glsi01g1936 608 Gene3D - 10 301 IPR015943 GO:0005515
Glsi01g1936 608 PANTHER OS03G0300300 PROTEIN 4 607 - -
Glsi01g1936 608 SUPERFAMILY WD40 repeat-like 12 286 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1936 115 253 U-box Gene Family AT2G33340 27.273 3.53e-07 51.2