Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1929 ATGGAGTCTTTCGTAGAAAAGGCTTTCCCTGGAAGACGCTCCTGGTTCCATTTTCTTCTCAGAGAAGTAATGGTTTCACTGAAGCTTCAGAAGCGGCTCGCATCGAGCGTGCTTAAGTGCGGGAGAGGGAAGGTCTGGCTTGACCCTAATGAGGTCAACGAGATATCCATGGCGAATTCCAGACAAAACATTAGAAAGCTGGTGAAGGATGGATTCATCATCAGGAAGCCAACTAAGATTCACTCTCGATCCCGTGCTCGTAGAATGAAGGAGGCCAAAAGAAAGGGCCGTCATTCTGGATATGGTAAGCGAAAGGGAACCAGGGAGGCAAGGCTGCCAACAAAAATTCTGTGGATGAGGAGAATGCGTGTGTTGAGGCGTCTGCTTCGTAAGTATCGTGAATCTAAAAAAATTGACAAGCACATATATCACGACATGTACATGAAGGTGAAAGGGAATGTCTTTAAGAACAAGCGGGTTTTGATGGAGAGCATCCACAAGTCCAAAGCTGAAAAGGCTAGAGAGAAAACACTCTCAGACCAGTTTGAGGCCAAGCGTGCTAAGAGCAAGGCAAGCAGGGAGAGAAAGTTGGCCAGGAAAGAGGAGCGATTGGCACAGGGACTTGGAGAGAGGGCACCTCCCGTTGCATCACAACCACCGTCTGAGGGAGCTAAGAAGACAAAGAAGTAA 690 0.4797 MESFVEKAFPGRRSWFHFLLREVMVSLKLQKRLASSVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHIYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKSKASRERKLARKEERLAQGLGERAPPVASQPPSEGAKKTKK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1929 229 FunFam Ribosomal protein L19 24 79 - -
Glsi01g1929 229 MobiDBLite consensus disorder prediction 83 108 - -
Glsi01g1929 229 Pfam Ribosomal protein L19e 27 168 IPR000196 GO:0003735|GO:0005840|GO:0006412
Glsi01g1929 229 ProSitePatterns Ribosomal protein L19e signature. 30 49 IPR023638 -
Glsi01g1929 229 Gene3D - 25 79 IPR015972 GO:0003735|GO:0005840|GO:0006412
Glsi01g1929 229 Gene3D - 80 212 - -
Glsi01g1929 229 CDD Ribosomal_L19e_E 27 190 IPR033935 GO:0003735|GO:0022625
Glsi01g1929 229 SUPERFAMILY Ribosomal protein L19 (L19e) 26 167 IPR035970 GO:0003735|GO:0005840|GO:0006412
Glsi01g1929 229 MobiDBLite consensus disorder prediction 83 102 - -
Glsi01g1929 229 FunFam Ribosomal protein L19 80 212 - -
Glsi01g1929 229 Hamap 50S ribosomal protein L19e [rpl19e]. 26 172 IPR000196 GO:0003735|GO:0005840|GO:0006412
Glsi01g1929 229 SMART Ribosomal_L19e_2 26 169 IPR000196 GO:0003735|GO:0005840|GO:0006412
Glsi01g1929 229 MobiDBLite consensus disorder prediction 168 229 - -
Glsi01g1929 229 PANTHER 60S RIBOSOMAL PROTEIN L19 24 210 IPR039547 GO:0003723|GO:0003735|GO:0022625
Glsi01g1929 229 MobiDBLite consensus disorder prediction 168 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1929 Glsi-ChrGlsi01 82737842 82740305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1929 24 229 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 82.775 7.50e-121 340