Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1927 ATGATTACAGATTCCTTTCAGAAACTCCATCTCTCACCACTTCCTCAGTTCACAGTGCCAACAGCCTTCGACCTTCTTGTTTCTCTCTCTGAAAAAAAAAAGAAGAAGCCTAAAGCCATGTGTGGTGGTGCCATCATTTCCGACTTCGTCTCTGCGAAGCGTGGCCGAAAATTGCCCAACCAAGACCTCTGGTCCGAGCTTGACACCTTCTCCGACCTCCTTGGCTTAGACGGCCCCAACGCAGCCTATTTTTCCACTCTCCAACCCAACCCCTTTGATCATCAAAACACCCCTCCAATCCCAACTAAGCAAGAGCCATCGGATGATAAGGTGGAGAAGAAGAGTACACAAAGGGTTCGGAAGAACGTGTACAGAGGAATCAGACAAAGGCCATGGGGCAAGTGGGCCGCTGAGATAAGGGACCCACATAAGGGTGTCCGAGTGTGGCTCGGCACCTACAACACAGCAGAGGAAGCTGCCAGAGCTTACGACGAAGCCGCCAAGCGCATCCGAGGAGACAAAGCGAAGCTCAACTTTCCCCACCAACCCCCACCGGCTCCGGCTCCGGCTCCGGCTCGACCCGCCAAGAAGCAGTGCCTTAGCCCGGAGTCGAGTCAGTCGACTTATCAACCCACCGGGCCACCGCCGCCGCGTTTGATGGGGTTTCATGATGACATGGAGCTGAAGCAGCAAATCTCGAGCCTGGAATCGTTCCTGGGCTTGGAGAATGAGCAGCAGCCGAGTGGAAGCAGTAGCGGTTCGACCGAGTGGGACTCGATGGAGCTGTGGATGCTGGACGACGTTGTTATGCATCACCTGAATAACCTTCACCATGGAAATGGAACATCGTCGTATAAAGCTTAA 864 0.5382 MITDSFQKLHLSPLPQFTVPTAFDLLVSLSEKKKKKPKAMCGGAIISDFVSAKRGRKLPNQDLWSELDTFSDLLGLDGPNAAYFSTLQPNPFDHQNTPPIPTKQEPSDDKVEKKSTQRVRKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTYNTAEEAARAYDEAAKRIRGDKAKLNFPHQPPPAPAPAPARPAKKQCLSPESSQSTYQPTGPPPPRLMGFHDDMELKQQISSLESFLGLENEQQPSGSSSGSTEWDSMELWMLDDVVMHHLNNLHHGNGTSSYKA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1927 287 Gene3D AP2/ERF domain 123 182 IPR036955 GO:0003700|GO:0006355
Glsi01g1927 287 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Glsi01g1927 287 FunFam Ethylene-responsive transcription factor 2 122 181 - -
Glsi01g1927 287 MobiDBLite consensus disorder prediction 105 119 - -
Glsi01g1927 287 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Glsi01g1927 287 SUPERFAMILY DNA-binding domain 123 181 IPR016177 GO:0003677
Glsi01g1927 287 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Glsi01g1927 287 MobiDBLite consensus disorder prediction 87 103 - -
Glsi01g1927 287 PANTHER DNA-BINDING DOMAIN 103 230 IPR044808 GO:0003700|GO:0009873
Glsi01g1927 287 MobiDBLite consensus disorder prediction 176 222 - -
Glsi01g1927 287 CDD AP2 124 182 IPR001471 GO:0003700|GO:0006355
Glsi01g1927 287 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Glsi01g1927 287 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Glsi01g1927 287 MobiDBLite consensus disorder prediction 87 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1927 Glsi-ChrGlsi01 82716436 82720981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1927 40 272 AP2-EREBP Transcription Factor Family AT3G16770 47.510 9.21e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi01g1927 AP2 3.6e-15 CL0081