Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1910 ATGGTCTTCAAGGGCAGGTTCTTCTCTTCCAAGAAATCGGACTCTTCAAGCCCCGATGGATCATCCAGTAGCCCGCGATCACTCGGCTCCAATTCCCCCCGCAGATCCGACAAGAAGAAGGTCAAATCAACTGCCAAAGAAGCCCAGATCGCTAACAGTAGTAGCGGCGGCGGGGGGTTTGGTGCCGCCGCGGTACGCCGTCAAACGCAAGTGAAGGACGTCAAAGGCAAGGATAGTCCAACTCAAGCAGAGTCCCGTTTGACATCGTTGAAGATAAGCTCCAGGGTGGAATTGGGTTCTAGTTTGTTGCAGAATTCGGGGTCAAAGTCAAAGAAGGCGGCGGCTGACGGGAAGGAATCTCCGTCGTCCTCGGTTTCGCCAATTTTGGCATCGTCCCTTGGATTGAACAGGATAAAGACGAGATCAGGACCGTTGCCACAAGAGAGCTTTTACGGGTTTAGAAGTGATAAGGGGTCGACACTTGGTGCAAGTAACCTTTCCAGGCTTGGTGGGAGTTCAGGTTCCGGAAGTGGGGGAAAGAAGAAGGGGTTGGTGAATCAGAGCAGAGTGGGTTTTCAAGAGAGTCTGGGCGGCGGCAATTGGGTCGATAATGGGAGTAACTCTGATAGTATGTCGACTGGGAGTGCTCCGTCCAGGGACCAAAGCCCTAATGTATTGGCACGGTCGCGGCTACAGAACGGGGAATCATCATCCGAAGCAGGGAAACATGATTCTTCCTTGTCTCAGTCTGGAGGCTTAAGAAGTGCAGATGTCTGCACTCCAGAGACATCATTTGATTTTGAAAACCCGAAGGAGTCTGAATCTCCTCGTTTCCAAGCTATATTACGAGTCACAAGTGCACCCAGAAAGAGGTTTCCAGGTGACATTAAGAGTTTCTCCCACGAGTTGGATTCCAAAGGTGTCCGACCTTTTCCATCTTGGAAGTCTCAAGGGTTAAATAACTTGGAGGAGATTTTGGTTGTCATTCGGACAAAATTTGATAAAGCTAAGGAAGAGGTGAACTCTGATCTGGCTATTTTTGCAGCAGACCTGATTGGAGTTCTTGAAAAAAATGCAGATACTCATCCTGAGTGGCAAGAGACAATTGAGGACTTGCTGGTTTTGGCTAGGAGTTGTGCTATGACTTCACCTGGGGAGTTTTGGCTTCAGTGTGAAGGCATAGTTCAGGAGTTGGATGATCGGCGTCAAGAACTGCCTCCTGGGATGCTCAAGCAGCTTCACACCCGAATGCTTTTCATTCTCACAAGGTGTACCAGATTGTTGCAATTCCACAAGGAAAGTGGTTTAGCTGAGGATGAACATGTTTTTAATCTCCGTCAATCTAGAGTCTTGCATTCTGCTGGAAAACTTATTCCTCCGGGCTTGGGAAGGGATGCAAAAAGTTCTAGTGCTGCAAAGGCCTCAAAGGCCTCAGCCATAAAATCTTATAGTCAGGAGGAGCGTATCTTGGATTTGAAGCAAAATGTTGTGCAGCAAGAAAGTCTATCAATTCCTGCCAATGATGACAGTTCAAAACCCTTTGAGTCTCCTTCAGGCAGGGATCGGATAGCTTCTTGGCGGAAATTACCATCTCCACGAGTAAAAAGTTCAAAAGAAGCTGCTCAGTTGAAGGACCCAACTTATGGGAGGGTTGAACCTTCAAAGATATCAAATAATAAGAGATCAACTTCTGATGTGGATCTATTTGCTGCCAAGCCATCTGAGCTTCTTCCTATCAATGACTCCCGGGAACATACTTCCAAGCACAAACAAAATATTAATGAGGAGAGTTCAATAATTTGTCGTATATGTGAGGAGGAAGTTCCTACTTCATATGTTGAAGATCATTCAAGGATTTGTGCAATTGCTGATAGGTGTGATCAGACAGGTCTTAGTGTTAATGAGCATCTTCTGAGAATTGCTGATACTCTAGAAAAGATGATGGAATCATGTACACAGAAGGATACCCAACAAGCAGTGGGAAGTCCCGATGTTGCAAAAGTGTCAAATCCAAGTATGACTGAAGAATCCGATGTTCTCTCTCCGAAACTTAGTGATTGGTCTCGCAGGGGATCGGAGGATATGCTAGACTGTTTCCCTGAAGCTGATAATTCTGCTTTCATGGATGACCTAAAGGGGTCACCTCTAATATCATGTAAAACTCGTTTTGGTCCTAAGTCTGACCAAGGCATGACAACATCATCTGCGGGAAGCTTGACTCCTAGGTCTCCTTTACTGACCCCGAAGATGAGTCAGATTGACTTGCTCTTGGCAGGGAAGGGTGCTTATTCTGAACATGATGATATTCCACAGATGAATGAACTTGCTGATATAGCACGATGTGTAGCAAATACACCTCTGGATGATGATCGCTCAATGTCATATTTATTATCTTGTCTTGATGATTTGCGGGTTGTTGTAGACCGAAGGAAGTTTGATGCACTTACTGTGGAGACCTTTGGAACACGCATTGAGAAGCTGATACGGGAGAAGTATTTGCAGCTTACTGAGATGGTGGAAGATGAGAAGATAGATATACCAACCCCCACAATCGATGAAGATGCTCCCTTGGAGGATGATGTGGTTCGAAGCTTGAGAACAAGTCCTATCCATTCTTCAAAGGACCGTACCACTATTGATGACTTTGAGATTATTAAACCTATCAGTCGTGGGGCATTTGGACGGGTTTTCTTGGCTAAAAAGAGAACAACAGGGGACCTTTTTGCAATAAAGGTTCTCAAGAAGGCAGATATGATCCGTAAGAACGCTGTGGAAAGTATATTGGCTGAACGTGATATCTTAATTACAGTGCGCAATCCTTTTGTGGTTCGTTTCTTCTATTCTTTTACATGTAGTGAGAACTTGTACCTTGTCATGGAGTATCTTAATGGAGGTGACCTGTATTCATTATTAAGGAATTTAGGTTGCCTAGATGAGGAAGTTGCTCGTGTATATATTGCTGAAGTGGTGCTTGCTCTAGAATATTTGCATTCCCTGCATGTAGTTCATCGTGACTTGAAGCCTGACAATTTGTTGATTGCACATGATGGTCATATTAAGTTAACAGATTTTGGGCTTTCAAAAGTTGGTCTCATCAACAGCACTGATGATCTGTCTGGTCCAGCAGTGAGTGGGACATCCCTACTTGGGGATGATGAACCTCATTTATCTACATCAGAGCATCAAAGGGAGAGGAAGAAACGTTCTGCTGTGGGTACACCTGATTATTTGGCACCGGAGATACTTTTGGGAACTGGACATGGGTATACTGCTGATTGGTGGTCAGTTGGTGTCATTTTATTTGAATTGCTTGTTGGCATTCCCCCCTTCAATGCAGAGCATCCTCAGACCATATTTGATAATATTCTTAACCGTAAGATACCTTGGCCCCAGGTGCCTGAAGAAATGAGTCCTGAAGCACAAGATCTTATTGATCGATTATTGACTGAAGATCCTGATCAGAGACTTGGCGCTAGAGGGGCATCAGAGGTGAAGCAACATGTTTTCTTCAAGGATATAAACTGGGACACACTTGCCAGGCAGAAGGCTGCATTTGTTCCTTCTTCTGAGAGTGCTCTAGATACTAGTTATTTCACTAGTCGATATTCATGGACTGCTTCTGATGGCCATGTATATCCAGCCAGTGATATTGATAATTCTAGTGATGCAGATAGCTTAAGTGGCAGTAGCAGTTGCTTGAGCAATCGCCAAGATGAAGTGGGAGATGAATGTGGGGGTCTAGCTGAATTTGAGTCTGGCTCATCTGTCAATTACTCTTTTAGTAATTTCTCCTTTAAGAATCAGATATAAATCTCTCCCAGCTTGCATCAATCAACTATGATCTTCTCACCAAGGGATGGAAAGACGATCCACCTACAAATTCTAGTCCATAACTATAAGTCCAGAATTTGGTTCTTGACATATGACCTGTTCAATTTTTGGGGGCATAAGTGCATTTGTTGTTTGTATACCTTGTACATAGATTTAGAGGCTCAAACTTGTTCAGGATTTGCTCTTTTCTCATCAGGTAACAGGTAA 4038 0.4433 MVFKGRFFSSKKSDSSSPDGSSSSPRSLGSNSPRRSDKKKVKSTAKEAQIANSSSGGGGFGAAAVRRQTQVKDVKGKDSPTQAESRLTSLKISSRVELGSSLLQNSGSKSKKAAADGKESPSSSVSPILASSLGLNRIKTRSGPLPQESFYGFRSDKGSTLGASNLSRLGGSSGSGSGGKKKGLVNQSRVGFQESLGGGNWVDNGSNSDSMSTGSAPSRDQSPNVLARSRLQNGESSSEAGKHDSSLSQSGGLRSADVCTPETSFDFENPKESESPRFQAILRVTSAPRKRFPGDIKSFSHELDSKGVRPFPSWKSQGLNNLEEILVVIRTKFDKAKEEVNSDLAIFAADLIGVLEKNADTHPEWQETIEDLLVLARSCAMTSPGEFWLQCEGIVQELDDRRQELPPGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDEHVFNLRQSRVLHSAGKLIPPGLGRDAKSSSAAKASKASAIKSYSQEERILDLKQNVVQQESLSIPANDDSSKPFESPSGRDRIASWRKLPSPRVKSSKEAAQLKDPTYGRVEPSKISNNKRSTSDVDLFAAKPSELLPINDSREHTSKHKQNINEESSIICRICEEEVPTSYVEDHSRICAIADRCDQTGLSVNEHLLRIADTLEKMMESCTQKDTQQAVGSPDVAKVSNPSMTEESDVLSPKLSDWSRRGSEDMLDCFPEADNSAFMDDLKGSPLISCKTRFGPKSDQGMTTSSAGSLTPRSPLLTPKMSQIDLLLAGKGAYSEHDDIPQMNELADIARCVANTPLDDDRSMSYLLSCLDDLRVVVDRRKFDALTVETFGTRIEKLIREKYLQLTEMVEDEKIDIPTPTIDEDAPLEDDVVRSLRTSPIHSSKDRTTIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILITVRNPFVVRFFYSFTCSENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTSLLGDDEPHLSTSEHQRERKKRSAVGTPDYLAPEILLGTGHGYTADWWSVGVILFELLVGIPPFNAEHPQTIFDNILNRKIPWPQVPEEMSPEAQDLIDRLLTEDPDQRLGARGASEVKQHVFFKDINWDTLARQKAAFVPSSESALDTSYFTSRYSWTASDGHVYPASDIDNSSDADSLSGSSSCLSNRQDEVGDECGGLAEFESGSSVNYSFSNFSFKNQIXISPSLHQSTMIFSPRDGKTIHLQILVHNYKSRIWFLTYDLFNFWGHKCICCLYTLYIDLEAQTCSGFALFSSGNR 1345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1910 1345 SMART serkin_6 882 1170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1910 1345 MobiDBLite consensus disorder prediction 725 744 - -
Glsi01g1910 1345 ProSiteProfiles AGC-kinase C-terminal domain profile. 1171 1275 IPR000961 GO:0004674|GO:0005524|GO:0006468
Glsi01g1910 1345 PANTHER SERINE/THREONINE-PROTEIN KINASE 586 1264 - -
Glsi01g1910 1345 MobiDBLite consensus disorder prediction 526 540 - -
Glsi01g1910 1345 MobiDBLite consensus disorder prediction 81 138 - -
Glsi01g1910 1345 Pfam Protein kinase domain 882 1170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1910 1345 CDD STKc_MAST_like 888 1175 - -
Glsi01g1910 1345 MobiDBLite consensus disorder prediction 500 563 - -
Glsi01g1910 1345 ProSiteProfiles Protein kinase domain profile. 882 1170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1910 1345 MobiDBLite consensus disorder prediction 1 272 - -
Glsi01g1910 1345 Gene3D Transferase(Phosphotransferase) domain 1 966 1188 - -
Glsi01g1910 1345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1001 1013 IPR008271 GO:0004672|GO:0006468
Glsi01g1910 1345 Coils Coil 319 339 - -
Glsi01g1910 1345 SUPERFAMILY Protein kinase-like (PK-like) 879 1212 IPR011009 -
Glsi01g1910 1345 MobiDBLite consensus disorder prediction 1043 1070 - -
Glsi01g1910 1345 MobiDBLite consensus disorder prediction 9 31 - -
Glsi01g1910 1345 MobiDBLite consensus disorder prediction 1054 1070 - -
Glsi01g1910 1345 MobiDBLite consensus disorder prediction 722 744 - -
Glsi01g1910 1345 MobiDBLite consensus disorder prediction 656 678 - -
Glsi01g1910 1345 MobiDBLite consensus disorder prediction 158 257 - -
Glsi01g1910 1345 Gene3D Phosphorylase Kinase; domain 1 880 1199 - -
Glsi01g1910 1345 FunFam probable serine/threonine protein kinase IREH1 880 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1910 Glsi-ChrGlsi01 82558465 82574167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1910 1 1267 AGC Kinase Gene Family AT3G17850 64.938 0.0 1585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Glsi01g1910 Pkinase 6.9e-66 CL0016