Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1899 ATGAGCTTGCAAGCTCGAAACCAACGGAGGGATAGGTCCGGGGCTCCTGCCCATGGTGCTCGTCAGGAATGGGTTCCTAGAGTATCCAATACCAGTGTTCCACCATCCAATTTGCAGTTAGGTCAAAACGGTGATGCTGGTTGTTCAAATAATAGTGTTGCTCCGCCAGCAAGTCGGCATAGAAGTAATAATGGTTCAAGGGGTTGCACAAGTCATCCTATGAATCAGAGAAGTGAAAGGGTCAGGGAAAAGGGAAGGAGTGATAATCAGGTGAGGAAGGGATTGAGGGATTCTAATCTGCCTCAACTAGTGCAAGAGATTCAGGAAAAGCTTATGAAAGGCACAGTAGAATGCATGATTTGCTATGACATGGTCCGAAGATCTGCTCCTATCTGGTCTTGCTCGAGCTGCTACTCTATGTTTCACCTGAATTGTATAAAGAAGTGGGCTCGGGCACCCACTTCTGTTGATTTGTCTGCAGAGAAAAATGAAGGGTTTAATTGGCGCTGTCCTGGTTGTCAGTCCGTACAGTTCACATCATCCAAGGAGATTAGGTATGTTTGCTTTTGTGGAAAGAGGCCAGACCCACCATTTGATTTGTATCTGACACCACATTCATGTGGAGAACCATGCGGGAAGCCTCTTGAAAGGGAGGTGTTGATTACAAGAGGGACTAAGGAGGATCTCTGCCCTCATGTTTGTGTCTTGCAATGCCATCCAGGGCCATGCCCTCCTTGTAAAGCATTTGCCCCACCACGTTTATGTCCTTGTGGGAAGAAAACAATTACCACACGTTGCTCTGATGGGCAGTCTATTTTTACCTGTGGTCAACACTGTGACAAGCTTCTTGAATGTGGGCGTCATCGTTGTGATCGCATTTGTCATGTAGGTCCTTGTGATCCTTGTCAGGTTCTAATCAATGCCTCTTGCTTCTGCAATAAAGAGATGGAGGTTATTCTTTGTGGGGACATAGCTATGAAGGGTGAAATTAGAGCAGGAGGTGTTTTTTGTTGTGGTTCCAATTGTGGAAAGAAACTTAGTTGCGGTAATCATATTTGTAATGAGGTTTGTCATCCAGGAAGCTGTGGGGAGTGTGACTTTTTACCAAGCCGGATTAAGACATGCTGTTGTGGGAAAACAAGATTGGAGGAGGAACGACAGAGTTGTTTGGACTCAATACCTACCTGTTCGAAAGTATGTGGCAAACCCCTTCCTTGTGGGATGCATAATTGTAAAGAGGCATGTCATGCTGGGGACTGTTCACCTTGTTTGGTTCTAGTCTCCCATAAGTGTCGGTGTGGCTCAACTTCCCAGACTGTGGAGTGCTATAAGACAACGAGGGAGAATGAAAAATTTACTTGTAAAAAGTCCTGTGGGCGGAAAAAGAACTGTGGAAGGCATCGATGTAGTGAACGTTGTTGTCCACTTTCTAATCCAAATAATACAAGTGTTGATTGGGATCCTCACTTTTGTTTCATGCCATGTGGAAAGAAGCTAAGGTGTGGGCAGCATGCTTGTGAATCCCAGTGTCACAGTGGTCATTGTCCACCTTGCCTTGAAACTATCTTCACTGACATGACATGTGCTTGTGGGAGGACTTCAATCCCTCCTCCTCTTCCTTGTGGCACGCCGCTTCCTTCATGTCAGCTTCCATGTTCAATTCCTCAGCCTTGCGGCCATTCTGCTTCCCACAGCTGCCATTTTGGAGACTGCCCACCTTGTTCAGTGCCTGTAGCAAAAGAATGTATTGGTGGGCATGTGATTCTTAGGAACATACCTTGTGGTTCAAAGGATATTAGATGTAATAATCTCTGTGGGAAGACTAGACTGTGTGGTTTACATGCTTGTGGCAGAACATGCCACCGTCCACCTTGTGATATTCCATCTGGTTGTAAGCAAGGCTTCTGCTCGTCTTGTGAGCAAATATGTGGTGCTCCGAGGAGAGACTGCAGGCATACATGTACAGCTCCATGTCACCCCTCATCTCCATGTCCCGATATAAGGTGCGAATGCCCTGTCACCATCGCTTGTTCTTGTGGCCGTCTAACAGCAAATGTTCCTTGTGATGCTGGTGGCAGCAGTGGTAATTATAATGCTGATGCCATACATGAGGCTTCCATTATTCAAAAGTTGCCTGTCCCACTTCAACCAGTGGATTCTAATGGCAAGAAAGTTCCCCTTGGACAAAGAAAGCTTGTGTGTGATGATGAATGTGCTAAGTTGGAGCGTAAAAGGGCTCCTGCTGATGCTTTTGACATTAACACTCCAAATCTGGATTCTCTGCATTTGGGTGAGAACACTGTTACTTCTGAATTGCTTTCTGACCTGGTCAGGCGCGACCCTAAATGGGTTTTATCTATTGAGGAGAGATGCAAATATTTAGTGCTTGGCAAGAGCAGAGGAACTACACATGGTTTAAAAGTCCATGTTTTCTGTCCTATGCCAAAGGATAAGAGAGATGCAGTGAGGCTAATTGCTGGGAGATGGAAGCTTGCATTGAACGCTGCGGGTTGGGAGCCAAAGCGTTTTATTATAGTTCATGTTACCTTTAAGTCAAAGGCTCCAGCTCATGTGCTAGGGGTTAAGGGTACCACCACTGTAAATGTACCCCTTCCTCCTGCATTTGATCCTTTGGTAGACATGGACCCCCAGGTTGTTGCTTCTTTTCCTGACTTGCCAAGGGATGCTGATATTAGTGCGTTGGTATTGAGATTTGGTGGCGAGTGTGAACTTGTTTGGTTGAATGACAGAAATGCATTGGCTGTTTTTAATGATCCTGTGCGAGCTGCAACTGCAATGAGGAGGTTGGATCATGCAACAGTATATCAAGGAGCTGTTGTGGTTGTCCCAAATGTTGAGGCATCAGTGGCATTTTCAGCTACCAATGCCTGGGGTGGAGCTGTGACGATGACGAAAGAAGGAGGAGCACTGGCAGCATTAAAGGGTAAACAATGGAAAAAGGCTGTGGTTCAAGAACCTGGTTGGAGAAAAGATTCTTGGGGTGATGAAGAGTGGAGTAGTGACTCTGCTAACGTTTGGTCGTCTTTTCGGAAGAAGGAAACCCCAATTGCTGCTACATTAAACCGTTGGAGTGTCCTAGACCAACAATCATCTTCAAGTTCATGTGCTGCCACTGTTGGTATTGAAGTTTCTGGGGCACACTCAGCAAGTAGTGCTGTTTCGAAGTTGGAATCTCATAAGAGTGGCTCAAATCCAGAAGGGCATCATGGAGTAAACTTAGATGCAACAGAAGTTACTAATGTGGTAGATGATTGGGAAAAAGTACATGAATAA 3294 0.4566 MSLQARNQRRDRSGAPAHGARQEWVPRVSNTSVPPSNLQLGQNGDAGCSNNSVAPPASRHRSNNGSRGCTSHPMNQRSERVREKGRSDNQVRKGLRDSNLPQLVQEIQEKLMKGTVECMICYDMVRRSAPIWSCSSCYSMFHLNCIKKWARAPTSVDLSAEKNEGFNWRCPGCQSVQFTSSKEIRYVCFCGKRPDPPFDLYLTPHSCGEPCGKPLEREVLITRGTKEDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKTITTRCSDGQSIFTCGQHCDKLLECGRHRCDRICHVGPCDPCQVLINASCFCNKEMEVILCGDIAMKGEIRAGGVFCCGSNCGKKLSCGNHICNEVCHPGSCGECDFLPSRIKTCCCGKTRLEEERQSCLDSIPTCSKVCGKPLPCGMHNCKEACHAGDCSPCLVLVSHKCRCGSTSQTVECYKTTRENEKFTCKKSCGRKKNCGRHRCSERCCPLSNPNNTSVDWDPHFCFMPCGKKLRCGQHACESQCHSGHCPPCLETIFTDMTCACGRTSIPPPLPCGTPLPSCQLPCSIPQPCGHSASHSCHFGDCPPCSVPVAKECIGGHVILRNIPCGSKDIRCNNLCGKTRLCGLHACGRTCHRPPCDIPSGCKQGFCSSCEQICGAPRRDCRHTCTAPCHPSSPCPDIRCECPVTIACSCGRLTANVPCDAGGSSGNYNADAIHEASIIQKLPVPLQPVDSNGKKVPLGQRKLVCDDECAKLERKRAPADAFDINTPNLDSLHLGENTVTSELLSDLVRRDPKWVLSIEERCKYLVLGKSRGTTHGLKVHVFCPMPKDKRDAVRLIAGRWKLALNAAGWEPKRFIIVHVTFKSKAPAHVLGVKGTTTVNVPLPPAFDPLVDMDPQVVASFPDLPRDADISALVLRFGGECELVWLNDRNALAVFNDPVRAATAMRRLDHATVYQGAVVVVPNVEASVAFSATNAWGGAVTMTKEGGALAALKGKQWKKAVVQEPGWRKDSWGDEEWSSDSANVWSSFRKKETPIAATLNRWSVLDQQSSSSSCAATVGIEVSGAHSASSAVSKLESHKSGSNPEGHHGVNLDATEVTNVVDDWEKVHE 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1899 1097 CDD NF-X1-zinc-finger 396 444 - -
Glsi01g1899 1097 ProSiteProfiles Zinc finger RING-type profile. 118 174 IPR001841 -
Glsi01g1899 1097 ProSiteProfiles Zinc finger PHD-type profile. 115 176 IPR019787 -
Glsi01g1899 1097 CDD NF-X1-zinc-finger 338 383 - -
Glsi01g1899 1097 MobiDBLite consensus disorder prediction 25 75 - -
Glsi01g1899 1097 CDD NF-X1-zinc-finger 275 323 - -
Glsi01g1899 1097 CDD RING-CH-C4HC3_NFX1-like 117 174 - -
Glsi01g1899 1097 SMART znfxneu3 650 671 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 SMART znfxneu3 230 248 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 SMART znfxneu3 501 520 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 SMART znfxneu3 558 576 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 SMART znfxneu3 611 633 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 SMART znfxneu3 406 425 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 SMART znfxneu3 348 367 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 SMART znfxneu3 464 497 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 SMART znfxneu3 285 304 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 64 1003 IPR034078 GO:0003700
Glsi01g1899 1097 MobiDBLite consensus disorder prediction 1 97 - -
Glsi01g1899 1097 MobiDBLite consensus disorder prediction 76 93 - -
Glsi01g1899 1097 Pfam NF-X1 type zinc finger 406 423 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 Pfam NF-X1 type zinc finger 348 365 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 Pfam NF-X1 type zinc finger 464 475 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 Pfam NF-X1 type zinc finger 285 303 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 Pfam NF-X1 type zinc finger 643 671 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 Pfam NF-X1 type zinc finger 558 575 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 Pfam NF-X1 type zinc finger 501 518 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 Pfam NF-X1 type zinc finger 232 247 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 Pfam NF-X1 type zinc finger 611 626 IPR000967 GO:0005634|GO:0008270
Glsi01g1899 1097 SUPERFAMILY RING/U-box 108 178 - -
Glsi01g1899 1097 MobiDBLite consensus disorder prediction 1060 1085 - -
Glsi01g1899 1097 CDD NF-X1-zinc-finger 491 543 - -
Glsi01g1899 1097 CDD NF-X1-zinc-finger 207 268 - -
Glsi01g1899 1097 CDD NF-X1-zinc-finger 548 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1899 Glsi-ChrGlsi01 82491099 82494392 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Glsi01g1899 zf-NF-X1 46 No_clan