Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1896 ATGGCACTTGTCCGGGACCGTCGCCACCTCAATCTCCGCCTCCCTCTGCCCGAACCCTCCGAGCGCCGTCCTCGTTTCCCTCTCCCCCTCCCAACCACTACTACTTCCACTTCCACCTTCGCCCCCACCTCCACCGCCGCCATTGACATTGCTCCCAACGACATTGAAAAGCTCGAAGTTCTCGGCCATGGCAACGGGGGCACCGTCTACAAAGTCCGCCACAAGCGCACGTCTGCAATCTACGCTCTAAAGGTCGTACACAGTGACTCCGACCCGACGAAGTGCCGGCAAGTCCGAAGAGAGATGGACATCCTCCGCCGAACGGATTCACAGTACGTCGTCCAGTGTCACGGGTTCTTCGAGAAACCATCGGGTGACGTGGCGATTGTGCTGGAGTATATGGACTTGGGTACACTGGACACGCTGCTGAGGAAGAACGGCACGTTCTCCGAATCCCAACTCGCAACGGTGGCGCGTCAGGTTCTCAACGGGCTGAGCTACCTTCACGCTCACAAGATCATCCACCGGGATATCAAGCCCTCGAATCTGTTGGTGAATCGGGACATGGAGGTGAAAATCGGCGATTTCGGAGTCAGCAAGGTCATGTGCCGGATGTTAGACTCGTGTAATTCATACGTGGGTACGTGCGCGTACATGAGCCCGGAACGCTTCGACCCTGATAGGTACGACGGGAATTATAACGGGTATGCGGGTGATATATGGAGCTTGGGTCTGACGTTGTTTGAACTCTACGTGGGTCACTTCCCGTTTCTACCAGCGGGTCAGAGACCGGACTGGGCGACCTTGATGTGTGCGATTTGTTTCGCAGATCCGCCGAGCTTGCCGAAGCATGCCTCCGATGAGTTTCGGAGTTTCGTTGAGTGTTGCTTAAAGAAGGAAGCAAGTGAAAGGTGGACGGCATCTCAGCTTTTGACCCACCCGTTTCTGTGTAAACAATGA 960 0.5573 MALVRDRRHLNLRLPLPEPSERRPRFPLPLPTTTTSTSTFAPTSTAAIDIAPNDIEKLEVLGHGNGGTVYKVRHKRTSAIYALKVVHSDSDPTKCRQVRREMDILRRTDSQYVVQCHGFFEKPSGDVAIVLEYMDLGTLDTLLRKNGTFSESQLATVARQVLNGLSYLHAHKIIHRDIKPSNLLVNRDMEVKIGDFGVSKVMCRMLDSCNSYVGTCAYMSPERFDPDRYDGNYNGYAGDIWSLGLTLFELYVGHFPFLPAGQRPDWATLMCAICFADPPSLPKHASDEFRSFVECCLKKEASERWTASQLLTHPFLCKQ 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1896 319 Pfam Protein kinase domain 56 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1896 319 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Glsi01g1896 319 FunFam Mitogen-activated protein kinase 2 136 319 - -
Glsi01g1896 319 Gene3D Transferase(Phosphotransferase) domain 1 137 319 - -
Glsi01g1896 319 CDD PKc_MAPKK_plant_like 53 316 - -
Glsi01g1896 319 SMART serkin_6 55 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1896 319 MobiDBLite consensus disorder prediction 14 39 - -
Glsi01g1896 319 SUPERFAMILY Protein kinase-like (PK-like) 51 317 IPR011009 -
Glsi01g1896 319 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Glsi01g1896 319 FunFam Mitogen-activated protein kinase kinase 1 33 135 - -
Glsi01g1896 319 ProSiteProfiles Protein kinase domain profile. 55 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1896 319 Gene3D Phosphorylase Kinase; domain 1 31 135 - -
Glsi01g1896 319 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 41 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1896 Glsi-ChrGlsi01 82454229 82455188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1896 1 316 MAP Kinase Kinase Gene Family AT1G73500 63.722 1.55e-138 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Glsi01g1896 Pkinase 4.8e-66 CL0016