Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1893 ATGGTGCATGGGGCGGAGGGAGGGAGGAGGATAAAAGAGGACGAGGAGGAGTGGGAGGAGGAGGAGGAGGAGAAGTTTGAGGATGAAGAGTACAGCTCCACGAGGAAGAAGTCGTGTTGGAGAAGCTTAAGGCCTCGTCTGGATTTGTGTTTCAGCGACCATGAAAGTAGTGGGAAAGGCGGAACCGCCAGACACCGCGGAGGAGCTACTGATCGCCGCCGGCGATTTCTGATTCATCCCGATAACTGGTGGTACACAGTGTGGAAGCATATCATCCTGATATGGGCTGTGTACTCTTCCTTCTTCACTCCTATGGAGTTTGGATTCTTCAGAGGGTTGCCGGAAAAAATCTTCTTACTCGACATTGCTGGCCAATTCGCTTTCCTCATGGACATCATCATCCGGTTCTTCGTCGCCTATCGTGACACTCTCTCCTATTGCATGGTCTACAATCGCAAACAAATTGCCATGAGGTACTTGAAGTCTCGGTTCATAGTTGATTTTCTGAGTTGTCTACCGTGGGATTATATTTACAAGGCTACAGGCAGGAAAGAGATCGTAAGGTATCTTCTATGGATTAGACTATGTCGAGCATGTAGAGTGACCGAGTTTTTTGAGAGACTGGAGAAAAATATTAGGATCAATTACCTCTGTACAAGAATTGTGAAACTTCTTGTTGTTGAACTTTATTGTACACACACAGCTGCCTGCATTTTCTATTATCTTGCTACCACTATTCCCCCCTCCGAGGAAGGCTATACATGGATAGGCAGCTTAAAGATGGGTGACTATAGCTATTCAGAATTTAGAGATATAAATATTTGGAAGCGTTATGTGACATCACTCTACTTTGCAATTGTTACCATGGCAACTGTTGGCTATGGGGAGATTCATGCAGTCAATGTCAGGGAAATGATATTTGTCATGATTTACGTCTCCTTTGATATGATTCTTGGGGCTTACCTTCTTGGTAATATGACAGCATTGATTGTGAAAGGATCAAAAACAGAGAGGTTTAGGGATAAAATGGCTGATATTATTAAGTATATGAATAAAAACAATTTGGACAAGCAGATAAGTAAGGAGATAAAAGGCCATTTGCGGTTACAGTATGCTCGCAGTTACACTGAGGTTTCTGTTCTTGAGGATATTCCAGCCTCTCTTCGCACAAAGATTTCAGTGAATTTGTATGAGCAGTTCATTCAAAAAGTTCCTCTTTTCAAAGGATGCTCTTTGGGGTTCATTAAGCAGATTGCAATCAGAGTCCGTGAAGAGTTTTTCCTCCCAGGGGAAGTGATTATGGAACAAGGAGATATAGCGGATCAACTTTACCTTGTATGTCATGGTGAGCTGGATGAGATAAAGATAGAAGATGGTGATGAAGAAGTGTCAATTAATCATTTGCAAAACTATAGTTGCTTTGGCGAGGTTTCTTTTCTTTGCAATATACCTCAACCTTCCATGATTCGAGCTCGTGAATTTTGCAAGATTTTGAGACTTGATAAACAATCCTTTACAGAAACACTGAAGATATACTTTGTAGAGGGTCGATTTATCCTGAACAATCTCCTTGAGGGAAAAGACTCCAGTCTTCATCAGAAGCTTCTGGAATCAGACTTCTCCCTGACTATTGAAAACCATGAAACAGAGATGGCTATGAGGATGAATTGTGCTGTCTATGAGGGAAACTTTCACCTTTTGAAACGTTTGATTGGAACAGGAGCAGATCCCAATAAGACTGATTATGATGGCAGATCACCTTTGCATATTTGTGCATCTAAAGGTTACGTAGATATTGCTTACTTTCTTATTGAGCAAGGAGTAATTACTAATATCTCAGATAAATTTGGGAATACTCCCTTGCTTGAAGCCATCAAGAATGGACATGAAGAAGTAGCTTCTTTACTTGTGAATGTGGGGGCTACTCTTACCATTGACCATGCTGGAAATTTTCTCTGCATGACTGTTGCAAAGAAGGAGTTGGGCTTTTTAAAAAAGGTTTTGGCCTATGGTATTAATCCAAATGCCAGAAATTATGATCAGCGAACACCTCTTCACATAGCTGCCTCTGAAGGTTTGTGTACAATGGCTGAACTGCTTCTAGAAGCTGGAGCAAGTGTTTTATCAAAGGACAGATGGGGAAATACACCGCTTGACGAGGCTCGTACTGGTGGAAATAGGGATATGATCAAAATGCTTGAAGTTGCAAAAATTTCTCAGTCGGCTGAGTTATCCAATAGTATACAAGAAACTCGAGATGAAATTCCAAAAAGGAAATGCACAGTATTTCCTTTCCATCCATGGGATCACAAAGTGAATAGAAGAGAGGGAGTTGTCCTATGGGTTCCACAAAGCATCGAAGAGCTTGTAAAGGTGGCAACGAAACATCTGAAATATTCAAGTGGTTCCTGTATTTTATCAGAACACGGGGGTAAAATTCTTGATGTAGACATGATTAGCAATGATGAGAAGCTATTTCTGGTGAGTGAAGCACAAGATGAAGTGCATAAAGTGATCTAA 2520 0.4131 MVHGAEGGRRIKEDEEEWEEEEEEKFEDEEYSSTRKKSCWRSLRPRLDLCFSDHESSGKGGTARHRGGATDRRRRFLIHPDNWWYTVWKHIILIWAVYSSFFTPMEFGFFRGLPEKIFLLDIAGQFAFLMDIIIRFFVAYRDTLSYCMVYNRKQIAMRYLKSRFIVDFLSCLPWDYIYKATGRKEIVRYLLWIRLCRACRVTEFFERLEKNIRINYLCTRIVKLLVVELYCTHTAACIFYYLATTIPPSEEGYTWIGSLKMGDYSYSEFRDINIWKRYVTSLYFAIVTMATVGYGEIHAVNVREMIFVMIYVSFDMILGAYLLGNMTALIVKGSKTERFRDKMADIIKYMNKNNLDKQISKEIKGHLRLQYARSYTEVSVLEDIPASLRTKISVNLYEQFIQKVPLFKGCSLGFIKQIAIRVREEFFLPGEVIMEQGDIADQLYLVCHGELDEIKIEDGDEEVSINHLQNYSCFGEVSFLCNIPQPSMIRAREFCKILRLDKQSFTETLKIYFVEGRFILNNLLEGKDSSLHQKLLESDFSLTIENHETEMAMRMNCAVYEGNFHLLKRLIGTGADPNKTDYDGRSPLHICASKGYVDIAYFLIEQGVITNISDKFGNTPLLEAIKNGHEEVASLLVNVGATLTIDHAGNFLCMTVAKKELGFLKKVLAYGINPNARNYDQRTPLHIAASEGLCTMAELLLEAGASVLSKDRWGNTPLDEARTGGNRDMIKMLEVAKISQSAELSNSIQETRDEIPKRKCTVFPFHPWDHKVNRREGVVLWVPQSIEELVKVATKHLKYSSGSCILSEHGGKILDVDMISNDEKLFLVSEAQDEVHKVI 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1893 839 ProSiteProfiles cAMP/cGMP binding motif profile. 406 509 IPR000595 -
Glsi01g1893 839 Gene3D - 86 332 - -
Glsi01g1893 839 ProSiteProfiles Ankyrin repeat region circular profile. 583 615 - -
Glsi01g1893 839 PRINTS EAG/ELK/ERG potassium channel family signature 121 131 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi01g1893 839 PRINTS EAG/ELK/ERG potassium channel family signature 230 240 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi01g1893 839 PRINTS EAG/ELK/ERG potassium channel family signature 489 497 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi01g1893 839 PRINTS EAG/ELK/ERG potassium channel family signature 278 295 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi01g1893 839 PRINTS EAG/ELK/ERG potassium channel family signature 322 331 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi01g1893 839 Pfam Ankyrin repeats (3 copies) 557 645 IPR002110 GO:0005515
Glsi01g1893 839 ProSiteProfiles Ankyrin repeat region circular profile. 616 643 - -
Glsi01g1893 839 CDD CAP_ED 406 512 IPR000595 -
Glsi01g1893 839 SMART ANK_2a 550 579 IPR002110 GO:0005515
Glsi01g1893 839 SMART ANK_2a 616 645 IPR002110 GO:0005515
Glsi01g1893 839 SMART ANK_2a 583 612 IPR002110 GO:0005515
Glsi01g1893 839 SMART ANK_2a 713 742 IPR002110 GO:0005515
Glsi01g1893 839 SMART ANK_2a 680 709 IPR002110 GO:0005515
Glsi01g1893 839 Gene3D Helix hairpin bin 334 393 - -
Glsi01g1893 839 Pfam Cyclic nucleotide-binding domain 426 510 IPR000595 -
Glsi01g1893 839 Pfam Ankyrin repeats (many copies) 668 721 IPR002110 GO:0005515
Glsi01g1893 839 Pfam Ion transport protein 86 330 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi01g1893 839 PANTHER POTASSIUM CHANNEL AKT1 64 831 IPR045319 GO:0005249|GO:0006813
Glsi01g1893 839 Gene3D Jelly Rolls 394 514 IPR014710 -
Glsi01g1893 839 ProSiteProfiles KHA domain profile. 759 839 IPR021789 -
Glsi01g1893 839 ProSiteProfiles Ankyrin repeat profile. 680 712 IPR002110 GO:0005515
Glsi01g1893 839 SUPERFAMILY cAMP-binding domain-like 334 523 IPR018490 -
Glsi01g1893 839 SMART cnmp_10 406 524 IPR000595 -
Glsi01g1893 839 FunFam Potassium channel SKOR 86 331 - -
Glsi01g1893 839 SUPERFAMILY Voltage-gated potassium channels 79 331 - -
Glsi01g1893 839 Pfam KHA, dimerisation domain of potassium ion channel 758 827 IPR021789 -
Glsi01g1893 839 ProSiteProfiles Ankyrin repeat profile. 616 648 IPR002110 GO:0005515
Glsi01g1893 839 ProSiteProfiles Ankyrin repeat region circular profile. 680 712 - -
Glsi01g1893 839 FunFam Potassium channel KAT2 394 530 - -
Glsi01g1893 839 MobiDBLite consensus disorder prediction 1 35 - -
Glsi01g1893 839 SUPERFAMILY Ankyrin repeat 505 733 IPR036770 -
Glsi01g1893 839 Gene3D - 640 758 IPR036770 -
Glsi01g1893 839 Gene3D - 519 639 IPR036770 -
Glsi01g1893 839 ProSiteProfiles Ankyrin repeat profile. 583 615 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1893 Glsi-ChrGlsi01 82417987 82430409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1893 10 712 Ion Channels AT5G37500 56.946 0.0 853