Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1891 ATGGTGTTAGGCTGGATAAGGAAGAAGAGGAATGGAAAGCCCAACATAGAACTGGTGATTCCTAGCCATTTCAGATGCCCAGTTTCTCTTGATTTGATGAAAGATCCTGTCACGTTATCTTCTGGGATTACATACGATCGAGAGAACATCGAAAGGTGGTTTGAAGATGGGAATTATACATGCCCTGTGACCAATCAGATTCTCAGGAACTTCGATCTGATCCCAAATCATACGCTTAGGGTAATGATTCAAGATTGGGGCGTGGAGAATAAAAAATATGGGGTTGAAAGAATTCCAACACCGAGAATACCCATTAGCCCAAACGAAATCGCAGAGGCTCTTCTGCATTTGAATGCCTCAGCTAGAAGTTTGGATCAATACGGGTGCTTAGAACTGGTTCAGAAAATTGAGAAATGGGGTTCAGAGAGTGAGAGAAACAGAAAGTGTATTGTGGAGAATGGAGCGCCTTTTGCTTTGGCCTCTGCATTTCATGCATTTTCGAATGATTCTATTGAGAAAAATGAGAAAGTGTTAGGAGAGATTTTGTCTGCCCTGAATTGGATGTTCCCACTTCAATTTGAAACCCGGAAAACTTTGGGATCTTCAGCTTCTTTACGTTGCATGGTTTGGTTCTTGAAGCACCAAGATCTTTCTGGAAAACAGAAGGCCATTGTGGCTCTAAGGGAGCTTCTTTCTCATGGTGATGAGCGGCAATTAGAAGCAATGGCAGAAATTGAAGGGGTAGAAGAGCTATTAGTGGAGTTCATTAACAAAAAAATTTGCCCAACAATTTCAAAAGCTTCAATGGCAATCATTTGGTACTTAGTTTCATCTTCTTATCCATCAAGTGAGAAGGTGAAACTGGAATTTATTGAAATGGGTCTGGTTTCTTCACTTCTGGAGATTCTAATAGACACAGAACAGAGCCTATGTGAGAAGGCTTTAGGTGTTTTTGACTCACTCTGCAGCTGTGAACAAGGGAGAGAAAAAGCTTATAGTAATGCTCTAACAGTTCCAATATTGGTGAAGAAAATATTGAGAGTTTCAGCTTTGGCAACAGATTTCTCTGTGTCCGCTATCTGGAAGCTGTGCAGGCACGGAGAGAAAGCTGAAGAAGAAGAAGAAGAAGCTCTGGTCGAGGCTCTTCAAGTTGGTGCCTTTCAGAAGCTCTTGTTGGTATTGCAGGTTGGTTGTGTTGACGAGACAAAGGAGAAAGCAACTGAACTTCTCAAACTGCTAAATCCATACAGGGAAGGCATGGAATGCATAGATTCAGATTTCAAGAACGTCAAGAGATCAATCTAA 1305 0.4153 MVLGWIRKKRNGKPNIELVIPSHFRCPVSLDLMKDPVTLSSGITYDRENIERWFEDGNYTCPVTNQILRNFDLIPNHTLRVMIQDWGVENKKYGVERIPTPRIPISPNEIAEALLHLNASARSLDQYGCLELVQKIEKWGSESERNRKCIVENGAPFALASAFHAFSNDSIEKNEKVLGEILSALNWMFPLQFETRKTLGSSASLRCMVWFLKHQDLSGKQKAIVALRELLSHGDERQLEAMAEIEGVEELLVEFINKKICPTISKASMAIIWYLVSSSYPSSEKVKLEFIEMGLVSSLLEILIDTEQSLCEKALGVFDSLCSCEQGREKAYSNALTVPILVKKILRVSALATDFSVSAIWKLCRHGEKAEEEEEEALVEALQVGAFQKLLLVLQVGCVDETKEKATELLKLLNPYREGMECIDSDFKNVKRSI 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1891 434 Gene3D - 113 413 IPR011989 -
Glsi01g1891 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 97 IPR013083 -
Glsi01g1891 434 FunFam RING-type E3 ubiquitin transferase 20 91 - -
Glsi01g1891 434 SUPERFAMILY RING/U-box 16 96 - -
Glsi01g1891 434 SUPERFAMILY ARM repeat 172 389 IPR016024 -
Glsi01g1891 434 ProSiteProfiles U-box domain profile. 19 93 IPR003613 GO:0004842|GO:0016567
Glsi01g1891 434 CDD RING-Ubox_PUB 21 73 IPR045210 -
Glsi01g1891 434 PANTHER WDSAM1 PROTEIN 17 416 IPR045185 GO:0061630
Glsi01g1891 434 Pfam U-box domain 20 91 IPR003613 GO:0004842|GO:0016567
Glsi01g1891 434 SMART Ubox_2 23 86 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1891 Glsi-ChrGlsi01 82409828 82411132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1891 2 432 U-box Gene Family AT5G37490 45.853 1.44e-119 353