Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1884 ATGTTAGCCAATAACTCTGCCTCCTCAGTTCCTACTAATTCTGAGCCCTTTTCCTGCGCTGCTGAGAACGGCAATATTCTCACTACTAACAAAAGGAAAAGAAGACCAGCAGGAACTCCAGATCCAGATGCAGAGGTGGTGTCTCTCTCCCCCAAGACCTTACTGGAATCAGATCGTTACGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGGCGCCACAAGGTGCCGTGGAAACTTTTGAAGAGGGAGACGCCGGCTGTGAGGAAGAGAGTGTTCGTGTGCCCTGAGCCCACCTGCTTGCACCACGAGCCCTGCCATGCCCTGGGCGATCTTGTCGGAATAAAGAAGCATTTCAGAAGGAAACACAGTAATCACAAGCAATGGGTCTGCGAGAAATGCTCCAAAGGCTATGCCGTGCAGTCTGATTATAAAGCCCATCTAAAAACCTGTGGCACCAGAGGCCATTCTTGCGATTGTGGTCGCGTTTTCTCAAGGGTGGAGAGCTTCATCGAACACCAAGATGCATGTAATATGGGGAGGCTCCGGCCGCTGGAATCGCAGCCACCACCAGCATGCTTGTCTCGAACCGCTTCGAGCCCTAGCCCATCTAGCGACACCAATTTCAGCGCAGGTCCGAATTGGCACCACCATGGTCTAGTAATCCCAAAGCCAACCGAACCCACATTCTTGAACCCTATTGCTCATAAACTCTTCCCCAACCTGGAGCTTCAGCTCTCAACCACTACATCCTCTGCCATTGATGATCCTCTAATAATAGCTGCATCATCACCCAAGAGAGATGAAACCCATCCTACCCATTTGCAGCTCTCAATTGGGTCATCCGAAATTAGCGAGAAAAATGAATCAAATAATAATAACAATAGTTCACCCGAAAGCGGCGAGAAACGGTCAGCGTTGGCAATGAGGGTTCATGTGGAGCAAGAGCAAGCACGTGAGAACTTGAGGCTAGCCATGGCAGAGAAGGCCTATGCTGAGCAGGAGTTCACGAAGGCAAAGAAGATTAGACAGCAAGCGCAAGCGGAACTAGACAAAGCCTATGCCTTAAAAGAGCATGCAATAAGGCAGATCAATTCCACTATGCTTCAGATAACTTGCCATGCTTGCAAGCAACGATTTCATCAAGCTAAAACGACGACGACGATCATGCCCGATGAGAACTCTTTGGTTTTAAGCTACGTGTCGTCTGCTATAACAACAGAAGGTGGTGGCGAAGTAGAGAACTATATTAACAATAATGGCTCTTAG 1293 0.4927 MLANNSASSVPTNSEPFSCAAENGNILTTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPAVRKRVFVCPEPTCLHHEPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPLESQPPPACLSRTASSPSPSSDTNFSAGPNWHHHGLVIPKPTEPTFLNPIAHKLFPNLELQLSTTTSSAIDDPLIIAASSPKRDETHPTHLQLSIGSSEISEKNESNNNNNSSPESGEKRSALAMRVHVEQEQARENLRLAMAEKAYAEQEFTKAKKIRQQAQAELDKAYALKEHAIRQINSTMLQITCHACKQRFHQAKTTTTIMPDENSLVLSYVSSAITTEGGGEVENYINNNGS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1884 430 MobiDBLite consensus disorder prediction 200 220 - -
Glsi01g1884 430 SUPERFAMILY beta-beta-alpha zinc fingers 57 83 IPR036236 -
Glsi01g1884 430 MobiDBLite consensus disorder prediction 1 47 - -
Glsi01g1884 430 Coils Coil 351 371 - -
Glsi01g1884 430 MobiDBLite consensus disorder prediction 1 32 - -
Glsi01g1884 430 Coils Coil 323 343 - -
Glsi01g1884 430 MobiDBLite consensus disorder prediction 271 313 - -
Glsi01g1884 430 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Glsi01g1884 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Glsi01g1884 430 FunFam protein indeterminate-domain 12-like 39 107 - -
Glsi01g1884 430 Gene3D Classic Zinc Finger 38 101 - -
Glsi01g1884 430 SMART c2h2final6 137 164 IPR013087 -
Glsi01g1884 430 SMART c2h2final6 101 131 IPR013087 -
Glsi01g1884 430 SMART c2h2final6 60 82 IPR013087 -
Glsi01g1884 430 MobiDBLite consensus disorder prediction 196 220 - -
Glsi01g1884 430 MobiDBLite consensus disorder prediction 282 310 - -
Glsi01g1884 430 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 383 IPR031140 -
Glsi01g1884 430 Gene3D Classic Zinc Finger 122 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1884 Glsi-ChrGlsi01 82373277 82375284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1884 22 423 C2H2 Transcription Factor Family AT2G01940 53.846 4.90e-139 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi01g1884 None None None