Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1874 ATGAGTGCTTCCACGACGAGGAAGAAGGTTCAGAGGAAGTGTAAGATCAGAGGGTACACTCTCAAAGTAGACGCGCTTGATGAGATCCTTTTCTTCGTCTCTCGATTCGAAACCCCTGATGAAGACGAAGCCATCGATCTCCTCCTCGATCAGCTCGAACACGAATCTCTGAAGTCTACTATAATAGACAAAGAATCGGTGCAACGGGTGGTGAACCTGCTGTTAGAAGCCGAAGCAGCTGTCGAGGAGAGCTCCGATGCTGCTGGCAGTGGTTCAGTCATTCGTGTTGTTGATGCATTCTTAATCCCCAAGTTTCGATACGACCCTATCAAAAAGCAATTCTACGAGAACACAGGCAGCTTACCTATTCATGGGGAAGCGTCAGCAAAAGCTGCTCTGTACAGGGATAGGTTTATGTTGCTGTTCCAGAGGCTCTCTCGTGACCAGCATTTTTCGAAGCCCGCTTTTGATTCAGAGTTTTCACATTTAGGAAGCTGTGAGATTTCTCCTATTCAATCTCTGGTTGGGCAAACTGGTAGAAGATGGGTCATGGGAGTGATATCACAATTGGAGGATGGGCATTTTTATTTGGAAGACCTGACCGCTTCAGTTGAAATAAATTTATCTAGTGCTATATCCTTTTGGTGTGGTATTATTATTTTCTTTGACAAGCAATACAAGATAACTACAGGATTCTTTTCAGAGAACACCATAGTTGTGGCAGAAGGTGAGATGCTGGTGGAAGGCATTTTTCAGGTTTTAACATGTGGATTCCCCCCATTGGAGGATAGAGATAAATCACTTAAATTAATTGCGGGACATGACTTTTTTGGTGGTGGTACTTTTACAAAAGAGGAAACTATCAGACTTGCAGAGATGGAAAAGAGAGCAGTCAATGACATGTTTGTTATACTATCAGATGTTTGGCTAGACAGTGAAGAGAAGGCTATGGGAAAGCTAAAGACTGTATTGGATGGTTTTGAGAGTGTGGAAGTGGTTCCTTCGTTATTTGTCTTCATGGGAAACTTCTCTTCTCACCCATGTAACCTTTCCTTTCATTCTTACTCAAGCCTCAGATTGCAGTTTGGCGAGCTAGGGCAAATGATTGCTGCCCATCCACGGCTAAAGGAGCACAGTCGATTTCTGTTCATTCCCAGTCCTGATGATGCAGGTCCTTCAACAGTTCTACCTAGGTGTGCTCTCCCAAAATATTTAACTGAAGAGCTCCAAAAGCATATTCCCAATGCCATATTTTCAAGCAATCCTTGCAGGATCAAATTCTACACTCAAGAAATTGTATTTTTCCGCCAGGATCTGCTGTATAGAATGCGTCGTTCGTGTTTAATGCCACCTTCTATGGAAGAAACAGATGATCCATTTCAGCATCTTGTTGCTACTATAACCCATCAGAGTCATCTCTGCCCATTGCCTCTAACTGTACAACCCATCATCTGGAATTATGACCACTGCCTTTATCTTTACCCAACTCCACATACGATAATATTAGGAGATAGAAGTCCGCAGAAGGCATTCAAGTACACTGGAATCACTTGTTTTAATCCTGGTTCTTTCTCAATTGACAGCACCTTTGTGGCATACCGTCCTTGCTCTCAGGAAGTTGAATTGTCAGCCTTGTCAGAAGTTTTTCCTGCTACGGAAGTGCAGTTGAAAATGGTGGCTGAGCAAATTGCAGAAAAGGCTAAGCAAATTTGTGCCAATAAATTGGTTGATGATGTGGATGTGGAAGTGGGTGAAGGTGATGCCAGGAATGTGCTGTGTGATGCTGTAGATAGACACCATGCATTCAATTCTTTTAAGAGGCATTTCATGGATAAAATCTTAAAAGCAAAAAGCCAGAGCGTTTCGAAAAGCTTGCCGGTTTTTTCGACGCAAGAAGCGAAGCCTAATACTGTGACTGTGAGTGCACAAATCAAGCCTTCAGTGCTTAAAAGCAAGAAAGCGTCTTCTTCAACTTTGTCGACCAAGAATGTGGCTATTATGAGAAAGAAAACCCTTGTAATGCCTACTTCGATAGTTGCAAGCAAGAGCTTATCCTTATCGGTGACACCGGCTTTCTTAAAGATTATTGGACTGTATAAAATCACAACTTCTATGATGCTAGCTAGACATGTTCAAATTGTTGGTAATCTCCTTGAAAAAGTTGTATTAGATCCTGTTGCCCAGCCGAGAGGTGTAAATAACCGTATCTATCTTTGGTACTCAACTGTGTCCACTTGCACTGAGCTGCCGAGAAAACTCAAGAAGTCTGAGAGGAAACCGCCGGTGAGGAGTTTTAATGAACTAAAGCGTGAAGCTAGACAGAAGAAGAAGGAGAGGCAAAAGGTGCATGAGATTATACTACAACCTCCTGAAAATGGCTTATTGGTCAAGCAGTTAGTTCCTGTTGCTCATGAAGTTTATGCTGCCAGATCTGAACTTTTATCTAGTGTTTCAAGGCTTGTTAAGTACGTTGCTATTTATACATGCAGTTTGTGTGGAGAAGCTCATGTTGGTCATCCACCACATAAAATAAAATCATGTAATGTTAGAGGAAGCCTATCAAGCAAAGAGCATAGTTGGGTCAGAGGGGGCATCGAACATGTTTTGCCACTTGTAGAGTCATTTCATCTGTATGACAGAATAGGAAGGGCTGTTTCACATAATGAAATGCTCGAAGTGGACCGAATTCCCGCAATTGTAGAATTGTGTGTCCAGGCAGGTGTTGACCTGCCTGAATATCCCACCAGGAGAAGGGCCTTCCCTGTCTACTGCGTTGCTGGTAGGATAATTGATTTTGAGAAAAGGTTCCCAAAAGATAATTCTCTTGGCAAAGACATCGATGCATGTGGGTTTTGGTATAATAAGAAGAGTGTGGATCAGGGCGTAAATTCAATGGAGCTGCATTCTAATGATATTCAAGCATGCTTCTGTGCAGCTATTGCTGTTCAAGGAATGAAAGCCTGGGAGAAAATGTGTACAGGAGCTTCAAAACTCATGAAGAAGTATGCTGCCCAAACCTGTGGATATTGTCCAGAGGTGCAAGTAGGACCTAAAGGTCATAGAGTACGAAATTGTCAAGCTTACAAACACCAAATGAGGGATGGGCAGCATGCCTGGCAAGAGGCTACAATCAATGATTTGATACCTCCAGTGTATGTCTATCACATTCGAGATCATCAATCTAGCAAACCTTTGGTAAATGGATTGAAGAGGTATTATGGAATGTTGCCTGCAGTGATTGAGCTATTTGCACAGGCTGGTGCATCTGTTGAAAAGAAATATTCAAGTGCAATGAGGGAAGATGTTGTAGTCCCTGAAATGGATGAGGAAAAGTGGGCTGTTTAA 3345 0.4251 MSASTTRKKVQRKCKIRGYTLKVDALDEILFFVSRFETPDEDEAIDLLLDQLEHESLKSTIIDKESVQRVVNLLLEAEAAVEESSDAAGSGSVIRVVDAFLIPKFRYDPIKKQFYENTGSLPIHGEASAKAALYRDRFMLLFQRLSRDQHFSKPAFDSEFSHLGSCEISPIQSLVGQTGRRWVMGVISQLEDGHFYLEDLTASVEINLSSAISFWCGIIIFFDKQYKITTGFFSENTIVVAEGEMLVEGIFQVLTCGFPPLEDRDKSLKLIAGHDFFGGGTFTKEETIRLAEMEKRAVNDMFVILSDVWLDSEEKAMGKLKTVLDGFESVEVVPSLFVFMGNFSSHPCNLSFHSYSSLRLQFGELGQMIAAHPRLKEHSRFLFIPSPDDAGPSTVLPRCALPKYLTEELQKHIPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLMPPSMEETDDPFQHLVATITHQSHLCPLPLTVQPIIWNYDHCLYLYPTPHTIILGDRSPQKAFKYTGITCFNPGSFSIDSTFVAYRPCSQEVELSALSEVFPATEVQLKMVAEQIAEKAKQICANKLVDDVDVEVGEGDARNVLCDAVDRHHAFNSFKRHFMDKILKAKSQSVSKSLPVFSTQEAKPNTVTVSAQIKPSVLKSKKASSSTLSTKNVAIMRKKTLVMPTSIVASKSLSLSVTPAFLKIIGLYKITTSMMLARHVQIVGNLLEKVVLDPVAQPRGVNNRIYLWYSTVSTCTELPRKLKKSERKPPVRSFNELKREARQKKKERQKVHEIILQPPENGLLVKQLVPVAHEVYAARSELLSSVSRLVKYVAIYTCSLCGEAHVGHPPHKIKSCNVRGSLSSKEHSWVRGGIEHVLPLVESFHLYDRIGRAVSHNEMLEVDRIPAIVELCVQAGVDLPEYPTRRRAFPVYCVAGRIIDFEKRFPKDNSLGKDIDACGFWYNKKSVDQGVNSMELHSNDIQACFCAAIAVQGMKAWEKMCTGASKLMKKYAAQTCGYCPEVQVGPKGHRVRNCQAYKHQMRDGQHAWQEATINDLIPPVYVYHIRDHQSSKPLVNGLKRYYGMLPAVIELFAQAGASVEKKYSSAMREDVVVPEMDEEKWAV 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1874 1114 ProSiteProfiles APO domain profile. 828 912 IPR023342 GO:0003723
Glsi01g1874 1114 Coils Coil 1114 1114 - -
Glsi01g1874 1114 Gene3D - 1 73 - -
Glsi01g1874 1114 Coils Coil 765 785 - -
Glsi01g1874 1114 ProSiteProfiles APO domain profile. 1006 1092 IPR023342 GO:0003723
Glsi01g1874 1114 Pfam APO RNA-binding 979 1100 IPR023342 GO:0003723
Glsi01g1874 1114 Pfam APO RNA-binding 746 931 IPR023342 GO:0003723
Glsi01g1874 1114 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 4 545 IPR016266 GO:0003677|GO:0006261|GO:0008622
Glsi01g1874 1114 Pfam DNA polymerase alpha/epsilon subunit B 302 508 IPR007185 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1874 Glsi-ChrGlsi01 82261492 82272474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1874 17 514 Core DNA Replication Machinery Family AT5G22110 69.679 0.0 709